Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1613 197 3e-45 seq114236 154 3e-32 seq114234 138 3e-27 >seq1613 Length=19885 Score = 197 bits (218), Expect = 3e-45 Identities = 171/212 (81%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| |||||||| || |||||||| ||||| || || ||| || | |||||| Sbjct 822 AGTACAAGATGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGCTAAGCGTACGGCCATCT 763 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || || || || || ||||||| ||||||||||| Sbjct 762 TCCAGCTGCTTGCCGGCGAAGATTAGACGCTGCTGATCTGGAGGAATGCCTTCCTTGTCT 703 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || ||||| ||||||||||| ||| ||| ||||| || ||||||||| Sbjct 702 TGGATCTTCTGCTTGACGTTATCGATGGTGTCCGAGGCTTCGACCTCAAGCGTGATCGTC 643 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || ||||| || | ||||| Sbjct 642 TTTCCTGTGAGGGTTTTTACGAAGATTTGCAT 611 Score = 167 bits (184), Expect = 5e-36 Identities = 163/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| | ||| | ||| || || ||||||||||| || || ||||| | |||||||| Sbjct 364 GACCAAGTGCAAAGTCGATTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCTTC 305 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 || |||||||| |||||||| || || ||||| || ||||| | |||||||||||||| Sbjct 304 CAATTGCTTGCCAGCGAAGATGAGACGCTGTTGATCGGGAGGGATACCTTCCTTGTCCTG 245 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 ||| || || || || || |||||||||||||| |||||||| |||||||| || || Sbjct 244 GATTTTCTGCTTGACATTATCGATGGTGTCAGAAGCCTCAACCTCCAGAGTGATGGTTTT 185 Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || |||||||| ||||| | ||||| Sbjct 184 ACCGGTAAGAGTCTTGACAAAGATTTGCAT 155 Score = 156 bits (172), Expect = 1e-32 Identities = 166/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| ||||| | ||| | ||| || ||||||||||| || || || ||||| | Sbjct 600 AGTCTCAGGACCAAGTGCAAAGTAGATTCTTTTTGGATATTGTAGTCACTGAGGGTACGG 541 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 ||||| |||| ||||| || ||||||||||| ||||| || |||||||||| ||||| Sbjct 540 CCATCCTCCAATTGCTTACCAGCGAAGATAAGACGTTGCTGATCAGGAGGAATCCCTTCT 481 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 || ||||| || || || || || || ||||||||||| || || || || ||||| Sbjct 480 TTATCCTGAATTTTCTGCTTGACATTATCGATGGTGTCGGAAGCCTCGACTTCAAGAGTA 421 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || ||||| || |||||||| || || | ||||||| Sbjct 420 ATGGTTTTTCCGGTCAGAGTCTTCACGAAAATCTGCATT 382 Score = 105 bits (116), Expect = 2e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 || ||| || | ||| | |||||| || || |||||||| || || ||||| | || Sbjct 142 TCGTAGAACCAAGTGCAAAGTGGATTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCC 83 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||| |||| |||||||| |||||||| || || || || || ||||||| |||||||| Sbjct 82 ATCCTCCAATTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGAGGAATGCCTTCCTT 23 Query 211019 GTCCTGGATCTTTTGTTTCAC 211039 ||||||||| || || ||||| Sbjct 22 GTCCTGGATTTTCTGCTTCAC 2 >seq114236 Length=889 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| ||||| | ||| | ||| || || || |||||||| || || ||||| | Sbjct 601 AGTCTGAGGACCAAGTGCAAAGTCGATTCCTTCTGGATGTTGTAGTCGCTTAGGGTGCGG 660 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || ||||||| |||||| || ||||||||||| |||||||| || ||||||| ||||| Sbjct 661 CCGTCTTCCAACTGCTTACCGGCGAAGATAAGACGTTGTTGATCTGGAGGAATGCCTTCT 720 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 || || || ||||| ||| || ||||||||||||||||| || ||||| | |||| Sbjct 721 TTATCTTGAATCTTCGATTTTACATTTTCGATGGTGTCAGAAGCCTCGACCTCCAAAGTG 780 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || | |||||| ||||| | ||||| Sbjct 781 ATAGTTTTACCGGTCAAAGTCTTGACAAAGATTTGCAT 818 Score = 152 bits (168), Expect = 1e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| ||||| | ||| | ||| || || || |||||||| || || ||||| | Sbjct 145 AGTCTGAGGACCAAGTGCAAAGTCGATTCCTTCTGGATGTTGTAGTCGCTNAGGGTGCGG 204 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || ||||||| |||||| || ||||||||||| |||||||| || ||||||| ||||| Sbjct 205 CCGTCTTCCAACTGCTTACCGGCGAAGATAAGACGTTGTTGATCTGGAGGAATGCCTTCT 264 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 || || || ||||| ||| || ||||||||||||||||| || ||||| | |||| Sbjct 265 TTATCTTGAATCTTCGATTTTACATTTTCGATGGTGTCAGAAGCCTCGACCTCCANAGTG 324 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || | |||||| || || | ||||| Sbjct 325 ATAGTTTTACCGGTCAAAGTCTTGACNAAGATTTGCAT 362 Score = 140 bits (154), Expect = 8e-28 Identities = 161/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| || || | ||| | ||| ||||||||||||||||| || || || || | || Sbjct 375 TCTCAGAACCAAGTGCAAAGTAGACTCTTTTTGGATGTTGTAGTCGCTNAGAGTGCGGCC 434 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||||| |||||||| || ||||| || || || || || ||||||| |||||||| Sbjct 435 GTCTTCCAATTGCTTGCCGGCAAAGATGAGACGCTGCTGATCGGGAGGAATGCCTTCCTT 494 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||||||||| || || ||||| || ||||| ||||| || || || ||||| || || Sbjct 495 GTCCTGGATTTTCTGCTTCACATTATCGATAGTGTCTGAAGCCTCGACTTCGAGGGTAAT 554 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || || | |||||| || || | |||||| Sbjct 555 AGTTTTGCCTGTCAAAGTCTTGACGAAGATTTGCATT 591 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 210981 AAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACG 211040 ||||| || || || || || ||||||| ||||||||||||||||| || || ||||| Sbjct 1 AAGATGAGACGCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTCACA 60 Query 211041 TTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTT 211100 || ||||| ||||| || || || ||||| || || || || || || | |||||| Sbjct 61 TTATCGATAGTGTCTGAAGCCTCGACTTCGAGGGTAATAGTTTTACCGGTCAAAGTCTTG 120 Query 211101 ACAAACACCTGCATT 211115 || || | |||||| Sbjct 121 ACGAAGATTTGCATT 135 >seq114234 Length=910 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| ||||| | ||| | ||| ||||||||||||||||| || || || || | Sbjct 745 AGTCTGAGGACCAAGTGCAAAGTAGACTCTTTTTGGATGTTGTAGTCGCTGAGAGTGCGG 686 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 |||||||||| |||||||| || ||||| || || ||||| || ||||||| ||||| Sbjct 685 CCATCTTCCAATTGCTTGCCGGCAAAGATCAGACGCTGTTGATCGGGAGGAATGCCTTCT 626 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 || || || ||||| || || || || || ||||||||||| || ||||| | ||| Sbjct 625 TTATCTTGAATCTTCTGCTTGACATTATCAATGGTGTCAGAAGCCTCGACCTCCAAAGTA 566 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || || || | ||| || || || | |||||| Sbjct 565 ATGGTTTTGCCTGTCAAAGTTTTCACGAAGATTTGCATT 527 Score = 132 bits (146), Expect = 1e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| || || | ||| | ||| ||||||||||||||||| || || || || | || Sbjct 287 TCTNAGNACCAAGTGCAAAGTAGACTCTTTTTGGATGTTGTAGTCGCTGAGAGTGCGGCC 228 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||||| |||||||| |||||||| || || ||||| || ||||||| ||||| || Sbjct 227 GTCTTCCAATTGCTTGCCGGCGAAGATGAGACGCTGTTGATCGGGAGGAATGCCTTCTTT 168 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || || ||||| || || || || || ||||||||||| || ||||| | ||| || Sbjct 167 ATCTTGAATCTTCTGCTTGACATTATCAATGGTGTCAGAAGCCTCGACCTCCAAAGTAAT 108 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || || | ||| || || || | |||||| Sbjct 107 GGTTTTGCCTGTCAAAGTTTTGACGAAGATTTGCATT 71 Score = 105 bits (116), Expect = 2e-17 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 210960 TCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTG 211019 || |||| |||||||| |||||||| || || || || || ||||||| || |||||| Sbjct 910 TCCTCCAATTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGAGGAATGCCCTCCTTG 851 Query 211020 TCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079 |||||||| || || ||||| || ||||| ||||| || || || ||||| || || Sbjct 850 TCCTGGATTTTCTGCTTCACATTATCGATAGTGTCTGAAGCCTCGACTTCGAGGGTAATA 791 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || || | |||||| || || | |||||| Sbjct 790 GTTTTACCGGTCAAAGTCTTGACGAAGATTTGCATT 755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1157367739422735