Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq114236 147 1e-30 seq114234 132 3e-26 seq1613 131 1e-25 >seq114236 Length=889 Score = 147 bits (162), Expect = 1e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || ||||| || || | || || ||||| || || |||||||| || | | Sbjct 591 AATGCAAATCTTCGTCAAGACTTTGACAGGCAAAACTATTACCCTCGAAGTCGAGGCTTC 532 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || | | || || ||||| ||||| ||||| | || || ||||| Sbjct 531 AGACACTATCGATAATGTGAAGCAGAAAATCCAGGACAAGGAAGGCATTCCTCCCGATCA 472 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||||||||| ||| ||||||||| |||||| | |||| ||||| Sbjct 471 GCAGCGTCTCATCTTTGCCGGCAAGCAATTGGAAGACGGCCGCACTCTNAGCGACTACAA 412 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||||||||| || || || || ||| | || ||| ||||||| Sbjct 411 CATCCAAAAAGAGTCTACTTTGCACTTGGTTCTGAGATTGAGAGGAGG 364 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || | || || ||||| |||||| | || || || | | Sbjct 818 ATGCAAATCTTTGTCAAGACTTTGACCGGTAAAACTATCACTTTGGAGGTCGAGGCTTCT 759 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| ||||| || ||| || |||||||| | || ||||||||| Sbjct 758 GACACCATCGAAAATGTAAAATCGAAGATTCAAGATAAAGAAGGCATTCCTCCAGATCAA 699 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || || ||||| || || ||||||||| ||||| || |||| |||||| Sbjct 698 CAACGTCTTATCTTCGCCGGTAAGCAGTTGGAAGACGGCCGCACCCTAAGCGACTACAAC 639 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || || || || || || || || || || | || || |||| ||| Sbjct 638 ATCCAGAAGGAATCGACTTTGCACTTGGTCCTCAGACTGAGAGGTGGA 591 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || | || || ||||| |||||| | || || || | | Sbjct 362 ATGCAAATCTTNGTCAAGACTTTGACCGGTAAAACTATCACTNTGGAGGTCGAGGCTTCT 303 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| ||||| || ||| || |||||||| | || ||||||||| Sbjct 302 GACACCATCGAAAATGTAAAATCGAAGATTCAAGATAAAGAAGGCATTCCTCCAGATCAA 243 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || || ||||| || || ||||||||| ||||| | |||| |||||| Sbjct 242 CAACGTCTTATCTTCGCCGGTAAGCAGTTGGAAGACGGCCGCACCCTNAGCGACTACAAC 183 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || || || || || || || || || || | || || |||| ||| Sbjct 182 ATCCAGAAGGAATCGACTTTGCACTTGGTCCTCAGACTGAGAGGTGGA 135 >seq114234 Length=910 Score = 132 bits (146), Expect = 3e-26 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || ||||| ||||| | || || ||||| || ||| | || || || | | Sbjct 71 AATGCAAATCTTCGTCAAAACTTTGACAGGCAAAACCATTACTTTGGAGGTCGAGGCTTC 130 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| | | || || || ||| || |||||||| | || || ||||| Sbjct 131 TGACACCATTGATAATGTCAAGCAGAAGATTCAAGATAAAGAAGGCATTCCTCCCGATCA 190 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || || |||||||| ||| ||||||||| |||||| | |||| ||||| Sbjct 191 ACAGCGTCTCATCTTCGCCGGCAAGCAATTGGAAGACGGCCGCACTCTCAGCGACTACAA 250 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| ||||||||||| || || || || || | || || |||| ||| Sbjct 251 CATCCAAAAAGAGTCTACTTTGCACTTGGTNCTNAGANTGAGAGGTGGA 299 Score = 129 bits (142), Expect = 4e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || ||||| ||||| | || || ||||| || ||| | || || || | | Sbjct 527 AATGCAAATCTTCGTGAAAACTTTGACAGGCAAAACCATTACTTTGGAGGTCGAGGCTTC 586 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| | | || || || ||| || |||||||| | || || ||||| Sbjct 587 TGACACCATTGATAATGTCAAGCAGAAGATTCAAGATAAAGAAGGCATTCCTCCCGATCA 646 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || ||||||||||| ||| ||||||| | |||||| | |||| ||||| Sbjct 647 ACAGCGTCTGATCTTTGCCGGCAAGCAATTGGAAGATGGCCGCACTCTCAGCGACTACAA 706 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| ||||||||||| || || || || || | || || |||| ||| Sbjct 707 CATCCAAAAAGAGTCTACTTTGCACTTGGTCCTCAGACTGAGAGGTGGA 755 Score = 107 bits (118), Expect = 1e-18 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || ||||| || || | || || ||||| || || |||||||| || | | Sbjct 299 AATGCAAATCTTCGTCAANACTTTGACCGGTAAAACTATTACCCTCGAAGTCGAGGCTTC 358 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || | | || || |||| ||||||||||| | || || ||||| Sbjct 359 AGACACTATCGATAATGTGAAGCAGAAAANCCAGGACAAAGAAGGCATTCCTCCCGATCA 418 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || || ||||| ||| |||| |||| || || | |||| ||||| Sbjct 419 GCAGCGTCTCATCTTNGCNGGCAAGCAATTGGANGACGGCCGNACNCTCAGCGACTACAA 478 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || || || || || || || || || | || || |||| ||| Sbjct 479 CATCCANAANGANTCNACTTTGCACTTGGTCCTGAGACTGAGAGGTGGA 527 >seq1613 Length=19885 Score = 131 bits (144), Expect = 1e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| ||||||||||| ||||| |||||||| || || || || || || Sbjct 611 ATGCAAATCTTCGTAAAAACCCTCACAGGAAAGACGATCACGCTTGAGGTCGAAGCCTCG 670 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || ||||| ||||| | || |||||||| Sbjct 671 GACACCATCGATAACGTCAAGCAGAAGATCCAAGACAAGGAAGGCATTCCTCCAGATCAG 730 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| |||| || |||||||| || |||||||| | || || | |||| |||||| Sbjct 731 CAGCGTCTAATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGTACGCTTAGCGACTACAAC 790 Query 23791 ATACAAAAAGAGTCCAC 23807 || |||||||| || || Sbjct 791 ATTCAAAAAGAATCTAC 807 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || || || || ||||| |||||||| || ||||| | | Sbjct 155 ATGCAAATCTTTGTCAAGACTCTTACCGGTAAAACCATCACTCTGGAGGTTGAGGCTTCT 214 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || ||||| ||||| |||||| | || || |||||| Sbjct 215 GACACCATCGATAATGTCAAGCAGAAAATCCAGGACAAGGAAGGTATCCCTCCCGATCAA 274 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || ||||| ||| ||||||| | ||||| | |||| |||||| Sbjct 275 CAGCGTCTCATCTTCGCTGGCAAGCAATTGGAAGATGGCCGCACCCTCAGCGACTACAAC 334 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || ||||| || || || || || || || || | ||| | || ||| Sbjct 335 ATCCAAAAGGAATCGACTTTGCACTTGGTCTTGCGATTGAGGGGTGGA 382 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || || || || |||||||| || ||||| ||||| || | | Sbjct 382 AATGCAGATTTTCGTGAAGACTCTGACCGGAAAAACCATTACTCTTGAAGTCGAGGCTTC 441 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || | | || || |||||| || |||||||| | || || ||||| Sbjct 442 CGACACCATCGATAATGTCAAGCAGAAAATTCAGGATAAAGAAGGGATTCCTCCTGATCA 501 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||| | || || || || || ||| |||| || | || || | | || ||||| Sbjct 502 GCAACGTCTTATCTTCGCTGGTAAGCAATTGGAGGATGGCCGTACCCTCAGTGACTACAA 561 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || |||||||| || || || || || || | || || |||| || Sbjct 562 TATCCAAAAAGAATCTACTTTGCACTTGGTCCTGAGACTGAGAGGTGG 609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337514688350612