Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq8437 221 9e-53 >seq8437 Length=12918 Score = 221 bits (244), Expect = 9e-53 Identities = 445/650 (68%), Gaps = 20/650 (3%) Strand=Plus/Plus Query 27086 TCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTC-AGC 27144 |||| |||| |||| ||| || || ||||| ||||| | || || || ||||| | Sbjct 5639 TCCTCGTTATGCTCAATGTCGGGAACGGTCTTGGCTCACGCTTCAGTTGT-TCTTCGATT 5697 Query 27145 GGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGT 27204 | ||| ||||||| | ||| || ||||| || || | || || || || || || ||| Sbjct 5698 GCTTCAACGTGATTCGTGTAAACATGAGCATCACCAATAGTATGTACGAAGTCACCGGGT 5757 Query 27205 TCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAG 27264 | | || || ||||| ||||| |||||||| | || ||||||||||| || || Sbjct 5758 TTCAAATTCGTAACATGAGCAATCATATACGTGAGTAAGGAATAGCTGGCGATATTGAAC 5817 Query 27265 GGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCG 27324 || | || | |||||||| | || | || || |||||||| || ||||||||||| Sbjct 5818 GGGATGCCTAAGCCCATGTCTGCAGATCGTTGATAAAGCTGACAAGACAGCTCTCCATCA 5877 Query 27325 CTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCA--TGAGGCCCAAGTCTT 27382 || ||||| || |||| || || ||||| || | |||| ||||| | || | Sbjct 5878 GAAACATAAAATTGGCATAGAGCATGACACGGGGGTAATGCCATTTGAGG--GATATCCT 5935 Query 27383 TGGGGTTCCAGGCGCACACGATGATGCGCCTG-TCTTC----TGGGTTGT-TCCTGATGA 27436 ||| ||||| ||||||| || || |||||| | ||| ||| |||| || || ||| Sbjct 5936 TGGCATTCCATGCGCACATTATAATCCGCCTGCTATTCGGATTGGATTGTATCGTGTTGA 5995 Query 27437 GGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCG 27496 | |||| ||||| || || || | || | ||| || | |||||| Sbjct 5996 TAACATCGGC------AAGCTGGTCAACACCTTTTCCAGTGTAATCGGCATGCATGTCTT 6049 Query 27497 TGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 27556 ||| || ||||| ||||| | |||||| || || || ||||| || ||||| ||||||| Sbjct 6050 GGTATTCAGCTCCAAAATGGCGCCATTGAAATCCATAAACCGGACCAAGGTCGCCCTCTT 6109 Query 27557 CCCTGTGCTCGAAGCCC-CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATC 27615 | | | || || ||| ||| || ||| ||| | || ||||| || ||||| || Sbjct 6110 CGC-GATCTGAAAACCCAGACTTACTCAGAAATTCTTTAGAGCCGTTTGCATCCCAAATG 6168 Query 27616 TTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGC 27675 | ||| ||| || ||||| || || | ||| || ||| | | |||||||| ||| Sbjct 6169 TGTACTTTCTTATCCGAGAGTTCCTTTGCGTTAGTACTCCCCTTTATGAACCACAACAGT 6228 Query 27676 TCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 27725 ||||||| ||| | ||||||| || | ||| |||||||| | ||||| Sbjct 6229 TCCTCCAATACGCCTCTCCAAAACACGCGCTTTGTCGTGAGCAAAGGAAA 6278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 368966169751709