Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq8437 105 3e-18 >seq8437 Length=12918 Score = 105 bits (116), Expect = 3e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 52110 ATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGGTAAGCTTTCG 52169 ||||| || | || || ||| | |||| |||||| ||||| |||| || |||| || Sbjct 5921 ATGGCATTACCCCCGTGTCATGCTCTATGCCAATTTTATGTTTCTGATGGAGAGCTGTCT 5862 Query 52170 TGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAGC 52229 || || | ||||| || ||||| |||||| ||| ||| | ||||| || || |||||| Sbjct 5861 TGTCAGCTTTATCAACGATCTGCAGACATGGGCTTAGGCATCCCGTTCAATATCGCCAGC 5802 Query 52230 TATTCCTTGCTGACGCATCTGATTGCTC 52257 |||||||| || ||| || ||||||||| Sbjct 5801 TATTCCTTACTCACGTATATGATTGCTC 5774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 189824799422790