Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1613 100 3e-16 seq114236 93.3 4e-14 >seq1613 Length=19885 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | || ||||| || || || || |||||||| |||||| Sbjct 837 CCGCCTCGGAGACGAAGTACAAGATGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGCTA 778 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || ||||||||||||||||| || || ||||| || || | ||| Sbjct 777 AGCGTACGGCCATCTTCCAGCTGCTTGCCGGCGAAGATTAGACGCTGCTGATCTGGAGGA 718 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||| ||| || ||||| ||| | | ||||| | || || Sbjct 717 ATGCCTTCCTTGTCTTGGATCTTCTGCTT-GACGTTATCGATGGTGTCCGAGGCTTCGAC 659 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | ||| ||||| || || || || || |||||||| || |||||| Sbjct 658 CTCAAGCGTGATCGTCTTTCCTGTGAGGGTTTTTACGAAGATTTGCATG 610 >seq114236 Length=889 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||| || || ||||| |||||| || ||||| |||| || | ||||||||||| || Sbjct 399 CTCTTTTTGGATGTTGTAGTCGCTNAGAGTGCGGCCGTCTTCCAATTGCTTGCCGGCAAA 458 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACG 41789 || || ||||| || || | |||| || ||||||||| |||||| ||||||| | Sbjct 459 GATGAGACGCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTCACATT 518 Query 41790 A-CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTT 41848 | || | |||||| | ||| || || | || || ||||| || |||| ||||| Sbjct 519 ATCG--ATAGTGTCTGAAGCCTCGACTTCGAGGGTAATAGTTTTGCCTGTCAAAGTCTTG 576 Query 41849 ACGAAAATCTGCAT 41862 ||||| || ||||| Sbjct 577 ACGAAGATTTGCAT 590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461609740746800