Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1531 224 1e-53 seq1787 86.0 6e-12 >seq1531 Length=8964412 Score = 224 bits (248), Expect = 1e-53 Identities = 565/851 (66%), Gaps = 12/851 (1%) Strand=Plus/Minus Query 16694 TTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATT- 16752 || || || ||||| | |||||||| || || || ||||||||||| ||||| || || Sbjct 403511 TTCTCAAAGAAGTTGCTCTTGCCCTCCAGGGAGATGTTCTCCATGAAGTCAAAGGGGTTT 403452 Query 16753 --AGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAAT 16810 ||| | || |||| || | || || || | | |||||||| |||||||| Sbjct 403451 TCAGT-GTTGTAAATCTTGCTGC--ACATCAAGTCTCCCAACAATCTATCTGCTACAAAC 403395 Query 16811 TCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCC 16870 || ||||| || ||| | || ||||| || || || || ||||| || || Sbjct 403394 TCAATATACTGTTTCATCAGGTCTTGATTCATCCCAATCAGCTTCACGGGAAGGGCGTCT 403335 Query 16871 GTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCAACTCGTT-CCTC 16929 |||||||| |||||| || || || | ||||| || | | | | |||| Sbjct 403334 GTCAAAAACTCTTGCTCAATCTTGACGGCACTGTCTATAAT-CTGGTGAATATCTGCCTC 403276 Query 16930 GGACGGTGTATGTTTA--AGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCC 16987 | || | ||| | || || ||||||||||||| || || || || | ||| Sbjct 403275 GCTTGGCCT--GTTAACCAGGTGGCTAAACATCAGACAGGCAAACTCAGTGTGCATCCCC 403218 Query 16988 TCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTT 17047 || ||||||||||| || ||||| || || |||| ||| |||||| ||||| ||||| Sbjct 403217 TCATCTCTGCTGATCAGCTCGTTGGAGAAAGTCAGCCCTGGCATCAATCCTCTCTTCTTC 403158 Query 17048 AACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCG 17107 ||||| ||||| || || || |||||||| || || || || || || | ||| || || Sbjct 403157 AACCAGAATATAGCTGCAAAGGACCCAGAGAAAAAGATCCCTTCCACAGCTGCGAAAGCA 403098 Query 17108 ATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCT 17167 | | ||||| | | || || || | |||||| | | ||||||| || Sbjct 403097 ACCACACGTTCCCCAAAAGTGGCTCGCAGGTCTCCAATCCACCTGAGGGCCCACTCAGCC 403038 Query 17168 TTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGG 17227 || | ||||| ||| | || || || || ||||| | | || ||| || || | Sbjct 403037 TTCTTCTTTACACAAGGTGTGGTCTCGATTGCATTAAACAGATGCTTTTTCTCATGCGGA 402978 Query 17228 TCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCT 17287 || || || || ||||| | || ||||||||||| || || |||||||| ||||| Sbjct 402977 TCCTCAATGTAGGTGTCGATCAAGAGACTGTACATTTCAGAATGGATGTTCTCAATGGCA 402918 Query 17288 ATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCC 17347 ||||| || || || ||||| | ||| || | | ||| || || |||||||| || Sbjct 402917 ATCTGGAAGCCATAGAAGCACCTGGCCTCGGTCAATTGCACCTCTTTGTAGAATCTCTCT 402858 Query 17348 GCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATG 17407 | ||||| || | ||||| || || || || || || || ||||| || | ||| ||| Sbjct 402857 ACCAGATTCTCACTGACGATACCATCACTAGCTGCAAAGAATGCCAAAATGTACTTGATG 402798 Query 17408 AAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACT 17467 || | |||||||| || ||| | ||| | | || || || ||| || ||| Sbjct 402797 AAGTGTTTTTCGTTGTCAGTGAGACTCCTCCAATGGTCCAAGTCCTTACCTATGTCTACT 402738 Query 17468 TCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTAT 17527 || || | ||||| || ||||| ||||| || ||||| ||| || || | || Sbjct 402737 TCCTCCGTTGTCCAGAATGACGCCACGGCCTTCTTGTACATGAACCAGATGTCGTGGTTC 402678 Query 17528 TGTATGGGGAA 17538 ||||| || || Sbjct 402677 TGTATAGGAAA 402667 >seq1787 Length=2284422 Score = 86.0 bits (94), Expect = 6e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 16955 AACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAA 17014 |||||||| || || || || || || | ||||||||||||||||| || ||||| || Sbjct 1959411 AACATCAGGCAGGCAAAGTCACAGTGCAGACCCTCGTCTCTGCTGATCAGCTCGTTGGAG 1959470 Query 17015 AATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCA 17074 || |||| ||| |||||| |||| ||||| | ||| || || || || || || || Sbjct 1959471 AACGTCAGCCCAGGCATCAGACCTCTCTTCTTCAGCCAGAAAATAGCAGCAAAGGAACCT 1959530 Query 17075 GAAAAGA 17081 |||| || Sbjct 1959531 GAAATGA 1959537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517530668809440