Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1531 277 2e-69 seq1648 129 6e-25 seq1787 95.1 1e-14 >seq1531 Length=8964412 Score = 277 bits (306), Expect = 2e-69 Identities = 608/903 (67%), Gaps = 26/903 (3%) Strand=Plus/Minus Query 15932 TTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATT- 15990 || || |||||||| | || ||||| | || || || ||||| || |||||||| || Sbjct 403511 TTCTCAAAGAAGTTGCTCTTGCCCTCCAGGGAGATGTTCTCCATGAAGTCAAAGGGGTTT 403452 Query 15991 --AGTAGCTGAAAATATCTTAGAGTACCCCAGTTC-CGTAACTAATCTATCTGCTACAAA 16047 ||| | || |||| ||| | || || || | ||| ||||||||||||||||| Sbjct 403451 TCAGT-GTTGTAAAT--CTTGCTGCACATCAAGTCTCCCAAC-AATCTATCTGCTACAAA 403396 Query 16048 TTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTT 16107 || ||||| || ||| | ||| ||| || || || || || ||||| || | Sbjct 403395 CTCAATATACTGTTTCATCAGGTCTTGATTCATCCCAATCAGCTTCACGGGAAGGGCGTC 403336 Query 16108 TGTTAAAAATTGTTGTTCTATCACAACCGCT---TCTTTAATG------ATATCGGTGGC 16158 ||| ||||| | ||| || ||| || || ||| |||| ||||| || | Sbjct 403335 TGTCAAAAACTCTTGCTCAATCTTGACGGCACTGTCTATAATCTGGTGAATATC--TGCC 403278 Query 16159 TCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATG 16218 ||| | | | || | ||||| ||||||| ||||| || || || || Sbjct 403277 TCGCTTGGC---CTGTTAACC----AGGTGGCTAAACATCAGACAGGCAAACTCAGTGTG 403225 Query 16219 TAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCG 16278 | || || ||||||||||| || |||||||| ||||| | ||||||||| ||||| Sbjct 403224 CATCCCCTCATCTCTGCTGATCAGCTCGTTGGAGAAAGTCAGCCCTGGCATCAATCCTCT 403165 Query 16279 TTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGC 16338 ||||| ||||||||||| || ||||| ||||| || || || || || || |||| ||| Sbjct 403164 CTTCTTCAACCAGAATATAGCTGCAAAGGACCCAGAGAAAAAGATCCCTTCCACAGCTGC 403105 Query 16339 AAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCA 16398 ||||| | | |||||| | | || || | | |||||| | | |||| Sbjct 403104 GAAAGCAACCACACGTTCCCCAAAAGTGGCTCGCAGGTCTCCAATCCACCTGAGGGCCCA 403045 Query 16399 TTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTC 16458 || || || | |||| |||| | || || || || ||||||| | || ||| || Sbjct 403044 CTCAGCCTTCTTCTTTACACAAGGTGTGGTCTCGATTGCATTAAACAGATGCTTTTTCTC 402985 Query 16459 CTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTC 16518 || ||| || || || || |||| | |||||||||||| || || |||||||| Sbjct 402984 ATGCGGATCCTCAATGTAGGTGTCGATCAAGAGACTGTACATTTCAGAATGGATGTTCTC 402925 Query 16519 TATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAA 16578 ||||| ||||| || ||||||||||| | ||||| | | ||| || || ||| || Sbjct 402924 AATGGCAATCTGGAAGCCATAGAAGCACCTGGCCTCGGTCAATTGCACCTCTTTGTAGAA 402865 Query 16579 TCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTG 16638 || || |||| |||||| | |||||||| ||||| || ||||| || ||||| |||| Sbjct 402864 TCTCTCTACCAGATTCTCACTGACGATACCATCACTAGCTGCAAAGAATGCCAAAATGTA 402805 Query 16639 CTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATAT 16698 ||| ||||| | |||||||| || ||| | ||||| | || || || ||| Sbjct 402804 CTTGATGAAGTGTTTTTCGTTGTCAGTGAGACTCCTCCAATGGTCCAAGTCCTTACCTAT 402745 Query 16699 ATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATC 16758 || ||||| || | ||||| || ||||| ||||| || ||||| ||| || || Sbjct 402744 GTCTACTTCCTCCGTTGTCCAGAATGACGCCACGGCCTTCTTGTACATGAACCAGATGTC 402685 Query 16759 ATTGTATTGTATGGGAAATACGACGTATCTATCTAAGGATTCCTTTAACACGGGTTCATC 16818 | || ||||| ||||| | |||| | | || || |||| || | ||| ||||| Sbjct 402684 GTGGTTCTGTATAGGAAAGATGACGAAGCGATTGGAGTTCTCCTGTAGTAGGGGCTCATC 402625 Query 16819 TTC 16821 || Sbjct 402624 CTC 402622 >seq1648 Length=77580 Score = 129 bits (142), Expect = 6e-25 Identities = 256/379 (68%), Gaps = 0/379 (0%) Strand=Plus/Plus Query 16178 TGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTG 16237 ||| | | ||||||||||| || || ||||| || || || | || ||||| | || Sbjct 8286 TGGATCAAGTGTTTAAACAACAGGCAGGCGAACTCACAGTGCAAGCCCTCGTCACGACTA 8345 Query 16238 ATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATC 16297 || ||||| || || || || | |||||||| || |||||||||| |||||| || Sbjct 8346 ATTAGTTCATTTGAGAAGGTCAGGCCTGGCATCAGCCCGCGTTTCTTTAGCCAGAAAATG 8405 Query 16298 GCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCC 16357 |||||||||||||| || ||||| | ||||| || | || || |||| | || ||| Sbjct 8406 GCAGCAAATGACCCTGAGAAGAAGACTCCCTCCACGGCAGCGAAGGCGACCAGCCGCTCC 8465 Query 16358 GCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATA 16417 || | | | |||||| | ||||| | | | |||| || || || | | Sbjct 8466 CCGAAGCTGGTGTCTTTACTGGCGATCCACTGCAGCGCCCAGTCCGCCTTCCTGCGCACA 8525 Query 16418 CAATCCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATAC 16477 || | || || | ||| |||| || | | ||| || || ||| Sbjct 8526 CAGGGGAGGGTCTCCACTGCCCGGAACAGCCGCTGTCTCTCCCCCGGGTCCCGGATGTAC 8585 Query 16478 GTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCA 16537 || |||||||| | |||||||| || ||||| | |||||| ||||| ||||| || ||| Sbjct 8586 GTGTCAATCAGCAGGCTGTACATCTCCGAGTGGACGTTCTCCATGGCGATCTGGAACCCA 8645 Query 16538 TAGAAGCATCGAGCCTCCG 16556 ||||| || |||||||||| Sbjct 8646 TAGAAACACCGAGCCTCCG 8664 >seq1787 Length=2284422 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 16193 AACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAA 16252 ||||| || || || ||||| || || || || |||||||||||||| || |||||||| Sbjct 1959411 AACATCAGGCAGGCAAAGTCACAGTGCAGACCCTCGTCTCTGCTGATCAGCTCGTTGGAG 1959470 Query 16253 AAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCC 16312 || || | ||| ||||| |||| ||||| | |||||| || |||||||| || || Sbjct 1959471 AACGTCAGCCCAGGCATCAGACCTCTCTTCTTCAGCCAGAAAATAGCAGCAAAGGAACCT 1959530 Query 16313 GAAAAGA 16319 |||| || Sbjct 1959531 GAAATGA 1959537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511399645694560