Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq1531 145 6e-30 >seq1531 Length=8964412 Score = 145 bits (160), Expect = 6e-30 Identities = 471/724 (65%), Gaps = 22/724 (3%) Strand=Plus/Plus Query 18627 ACTACAAAGCGTGTTTTTTGGAGGGCCGTCGTGGAAGAGTTGTTATGGTTTATCCGCGGG 18686 || ||||||||||| || ||||| | || || |||||| | | ||||| | || || Sbjct 376897 ACCACAAAGCGTGTGTTCTGGAGAGGGGTTGTCGAAGAGCTCCTCTGGTTCGTTCGGGGC 376956 Query 18687 TCAACCGATTCCAAAGAACTCGCCGCTAAAGATATACACATATGGGATATATACGGATCG 18746 || || | |||| ||||| | | ||| | | || ||||||||| |||| ||| Sbjct 376957 TCTACGAACGCCAAGGAACTTTCTGACAAAAAGGTGCATATATGGGATGCGAACGGTTCG 377016 Query 18747 AGCAAATTTCTAAATAGGAATGGCTT---CCATAA--AAGACACACGGGGGACCTTGGCC 18801 | |||| | | ||| ||| | |||| | | || ||| ||||| |||| Sbjct 377017 CGAGAATTCTTGGACAGGCGTGGTCTGAACCATTATGAGGA-----GGGAGACCTGGGCC 377071 Query 18802 CCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACTGTCAATCAAACT 18861 |||| || |||||||| ||||| || ||||||||||||||||| || || | ||| Sbjct 377072 CCATCTATGGCTTCCAATGGAGGCACTTTGGAGCGGAATATAAGGAT----AAAAACACT 377127 Query 18862 ATTTACAG----CAAGGAATCGATCAGCT-GCAAACTGTTATAGATACAATTAAAACAAA 18916 |||| ||||| | || ||||| || | || || | || || || | | Sbjct 377128 GACTACACGGGACAAGGTGTGGACCAGCTAGCCCAG-GTCATCCACACCATCAAGAATGA 377186 Query 18917 CCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGT 18976 ||| | | | | || || ||||| | ||||| ||| || | ||| |||| Sbjct 377187 CCCTCATGACAGGAGGATAATCATATCCGCGTGGAACCCACCAGACGTGCCCAATATGGC 377246 Query 18977 ACTACCTCCATGTCACACGTTATGT-CAGTTTTACGTTGCAAACGGTGAATTATCCTGCC 19035 || ||||| || ||||| || ||| |||||||||||| |||| || | || || | Sbjct 377247 GCTGCCTCCCTGCCACACCTT-TGTGCAGTTTTACGTTTGTGACGGCGAGCTCTCGTGTC 377305 Query 19036 AAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATG 19095 | | |||||| | || || || || ||||| || || ||||||||||| || | || Sbjct 377306 AGCTGTACCAGCGCTCCGGAGACATTGGCCTCGGCGTTCCGTTCAACATCGCCAGCTACA 377365 Query 19096 CACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTAATTCATA 19155 || || ||||| || |||| || | |||||||| || | || || || | || | Sbjct 377366 GTCTCCTGACCTATATGATAGCCCACATCACAGGACTAAAGCCTGGGGACTTTGTACACA 377425 Query 19156 CAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTGCAGCTAGCTC 19215 | |||| || || ||| | || | |||||||| || ||| | || | |||| || Sbjct 377426 CCCTGGGAGACGCGCATGTGTATCTCAATCATATCGACGCTCTTAACGAGCAGGTAAAGA 377485 Query 19216 GATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAATGTAACAGATATAAACGACT 19275 || ||| ||||||||| ||| || || | || || || | | || | |||| Sbjct 377486 GAAATCCACGACCTTTTCCCATCCTCAACATCAAACGCAAAGTGGAAAACATTGATGACT 377545 Query 19276 TTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAccccccccTAAAAATGGAAA 19335 | | | || ||||| | || ||| |||| ||||| || ||| ||||||| Sbjct 377546 TCAGGTTCGAGGATTTCGAAATTTGTGGCTATATGCCACATCCAAAGATAAGTATGGAAA 377605 Query 19336 TGGC 19339 |||| Sbjct 377606 TGGC 377609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399492762451860