Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq1531 132 3e-26 >seq1531 Length=8964412 Score = 132 bits (146), Expect = 3e-26 Identities = 443/687 (64%), Gaps = 2/687 (0%) Strand=Plus/Minus Query 101645 GGAAACGGTCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAG 101704 ||||| |||| ||| ||| | | | |||| |||||||| || || |||| | ||| Sbjct 377504 GGAAAAGGTCGTGGATTTCTCTTTACCTGCTCGTTAAGAGCGTCGATATGATTGAGATAC 377445 Query 101705 ATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCA 101764 | || || ||||| | || || | ||| || |||||| ||| |||| || || Sbjct 377444 ACATGCGCGTCTCCCAGGGTGTGTACAAAGTCCCCAGGCTTTAGTCCTGTGATGTGGGCT 377385 Query 101765 ATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCA 101824 ||||| | || | ||| ||||| || ||||| || || || || | || || || Sbjct 377384 ATCATATAGGTCAGGAGACTGTAGCTGGCGATGTTGAACGGAACGCCGAGGCCAATGTCT 377325 Query 101825 GCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACTTAAT 101884 | || | || ||||| ||||| || |||| || ||||| || ||||| || || Sbjct 377324 CCGGAGCGCTGGTACAGCTGACACGAGAGCTCGCCGTCACAAACGTAAAACTGCACAAAG 377265 Query 101885 ACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAAC 101944 || || || |||| | |||| || || | ||||| ||||| || | || | Sbjct 377264 GTGTGGCAGGGAGGCAGCGCCATATTGGGCACGTCTGGTGGGTTCCACGCGGATATGATT 377205 Query 101945 ATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAACT 102004 ||||| || || ||||| | || || || | || | ||| || ||||| || Sbjct 377204 ATCCTCCTGTCATGAGGGTCATTCTTGATGGTGTGGATGACCTGGGCTAGCTGGTCCACA 377145 Query 102005 CCTTCTCCTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGA 102064 |||| ||| | || || | | |||||||| ||||| || |||||||| || Sbjct 377144 CCTTGTCCCGTGTAGTCAGTGTTTTTATCCTTATATTCCGCTCCAAAGTGCCTCCATTGG 377085 Query 102065 AATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAA 102124 || ||||| | || || || ||||| || || | | | |||| | | || || Sbjct 377084 AAGCCATAGATGGGGCCCAGGTCTCCCTCCTCATAATGGTTCAGACCACGCCTGTCCAAG 377025 Query 102125 AATGATCTAGATCCATTCGCATCCCAAATGTGCACGCCAGCTG-CTGATAGCTCTTTGCT 102183 ||| || || || ||||||||||| || ||||| | || | || || || ||| Sbjct 377024 AATTCTCGCGAACCGTTCGCATCCCATATATGCAC-CTTTTTGTCAGAAAGTTCCTTGGC 376966 Query 102184 GTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATACTCT 102243 || ||||| || | | ||||| | || ||||| ||||| |||||||| || || | Sbjct 376965 GTTCGTAGAGCCCCGAACGAACCAGAGGAGCTCTTCGACAACCCCTCTCCAGAACACACG 376906 Query 102244 CTTAGTAGTTAAAAGTGGAAATTCATTTTCTAAACTAAACCTAGACTGTGTTCCAAAAAT 102303 ||| || || | | ||||| | | | |||| | | | |||| | ||||||| Sbjct 376905 CTTTGTGGTGAGCAAGGGAAACTGCCCTCTGAGACTATAGCGACACTGGGCACCAAAAAC 376846 Query 102304 ACTCAGTGTTCCAGTCCCTGTTCTGTC 102330 | || || || || ||||| | ||| Sbjct 376845 AGACAAGGTCCCTGTTCCTGTACGGTC 376819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361241038455308