Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq1531 286 4e-72 seq1224 134 2e-26 >seq1531 Length=8964412 Score = 286 bits (316), Expect = 4e-72 Identities = 478/688 (69%), Gaps = 10/688 (1%) Strand=Plus/Minus Query 145591 AAGTCCTCCGCCCTGAAGTCATCTATGTCCTCCACCCGCCTCAGGATCCTGAGCCTGGGA 145650 || ||||| |||||||||||| |||| ||||| | ||| |||| ||||| Sbjct 377561 AAATCCTCGAACCTGAAGTCATCAATGTTTTCCACTTTGCGTTTGATGTTGAGGATGGGA 377502 Query 145651 AAGGGCCGGGGGCTCCTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACG 145710 || || || || | || | | ||| || || | || | || ||||| || || Sbjct 377501 AAAGGTCGTGGATTTCTCTTTACCTGCTCGTTAAGAGCGTCGATATGATTGAGATACACA 377442 Query 145711 TGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACC 145770 |||||||| |||||| ||| | |||||||| |||| || || |||| |||||| | | Sbjct 377441 TGCGCGTCTCCCAGGGTGTGTACAAAGTCCCCAGGCTTTAGTCCTGTGATGTGGGCTATC 377382 Query 145771 ATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCC 145830 || |||||||| || ||||||||| |||||||| || || || || || ||||| || Sbjct 377381 ATATAGGTCAGGAGACTGTAGCTGGCGATGTTGAACGGAACGCCGAGGCCAATGTCTCCG 377322 Query 145831 GAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGGCAC-AGGAG 145889 ||||||||||||||||| || |||||||| ||| | ||||| |||| |||| | | Sbjct 377321 GAGCGCTGGTACAGCTGACACGAGAGCTCGCCGTCACAAACGTAAAACT-GCACAAAGGT 377263 Query 145890 GTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAG 145949 ||||||||| ||||| ||||| ||||| ||| | |||||||| |||| | || | Sbjct 377262 GTGGCAGGGAGGCAGCGCCATATTGGGCACGTCTGGTGGGTTCCACGCGGATATGATTAT 377203 Query 145950 CCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTG----AGCTGGTCCA 146005 ||||||| | |||| ||||||| || | |||| |||||||||| Sbjct 377202 CCTCCTGTCATGAGGGTCATTCTTGATGGTGTGGATGA----CCTGGGCTAGCTGGTCCA 377147 Query 146006 CGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACT 146065 | || || ||| ||| || || || ||| || | || || ||||||||||| | Sbjct 377146 CACCTTGTCCCGTGTAGTCAGTGTTTTTATCCTTATATTCCGCTCCAAAGTGCCTCCATT 377087 Query 146066 GGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCCCAGCCCGGCCCGGGCGA 146125 |||| || |||| ||| |||||||| || ||| || ||| || || | | | Sbjct 377086 GGAAGCCATAGATGGGGCCCAGGTCTCCCTCCTCATAATGGTTCAGACCACGCCTGTCCA 377027 Query 146126 GGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCCCCTCGCGGAGAGCTCATTGG 146185 ||| || || || ||||| || ||||| || | || | | || || || |||| Sbjct 377026 AGAATTCTCGCGAACCGTTCGCATCCCATATATGCACCTTTTTGTCAGAAAGTTCCTTGG 376967 Query 146186 AGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACCC 146245 || ||| || |||| | ||||||||| |||||||||| ||||| |||||||| || | Sbjct 376966 CGTTCGTAGAGCCCCGAACGAACCAGAGGAGCTCTTCGACAACCCCTCTCCAGAACACAC 376907 Query 146246 TCTTGGTGGTCAGCAGGGGGAACTGGCC 146273 ||| ||||| |||| ||| ||||| || Sbjct 376906 GCTTTGTGGTGAGCAAGGGAAACTGCCC 376879 >seq1224 Length=3633418 Score = 134 bits (148), Expect = 2e-26 Identities = 131/166 (79%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 145746 CTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAA 145805 || ||| || |||| ||||| || ||||||||| || || ||||||||||| |||||||| Sbjct 3005373 CTTGAGTCCTGTGATGTGGGTGATCATGTAGGTGAGGAGAGAGTAGCTGGCGATGTTGAA 3005314 Query 145806 GGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCC 145865 ||| || || || ||| |||| |||||||||||||||||||| || || || || ||| Sbjct 3005313 GGGTACGCCGAGTCCCGTGTCTCCCGAGCGCTGGTACAGCTGACACGACAGTTCTCCGTT 3005254 Query 145866 CGCCACGTAGAACTGG-CACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 || ||||||||| || ||| ||||||||| |||| ||||| Sbjct 3005253 ACATACATAGAACTGGACAAAGG-CGTGGCAGGGTGGCAACGCCAT 3005209 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146047 GCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGC 146106 || || ||||||||||||||||| ||||| || || || ||||| || ||| ||| Sbjct 3004518 GCACCAAAGTGCCTCCACTGGAAGCCGTACACAGGGCCGAGGTCTCCCTCCTCATAGTGG 3004459 Query 146107 CCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCCC 146166 | ||| || | | | |||||||| || || || |||||||||||||| | ||| Sbjct 3004458 CTCAGTCCACGCTTGTCCAGGAAGTCACGTGAGCCATTGGCGTCCCAGATGTGCACGTTT 3004399 Query 146167 CTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGG 146226 | | || || || || | || || ||||||| ||||| | ||||| || Sbjct 3004398 TTGTCAGAAAGTTCTGTGCCATTTGTAGAGCCCCTGACAAACCACAAGAGCTCCTCAGCT 3004339 Query 146227 ACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGAACTGGCC 146273 ||||||||||| || || | ||| |||||||||| ||| ||||| || Sbjct 3004338 ACCCCCCTCCAAAACACACGCTTCGTGGTCAGCAAGGGAAACTGCCC 3004292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590059776284320