Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1456 134 1e-26 seq317 125 6e-24 seq1001 114 1e-20 seq1446 105 6e-18 >seq1456 Length=293654 Score = 134 bits (148), Expect = 1e-26 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||| | ||||| || ||||| || || |||||||| || || ||||| ||| Sbjct 119177 CAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATC 119118 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || |||||| |||| ||||||||||| || || || |||||||||||||| Sbjct 119117 TTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 119058 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | || || || || | |||| |||||| | ||||||||| | ||| | || Sbjct 119057 TTGGATCTTGGCCTTGACATTCTCGATGGTGTCGGATGGCTCGACCTCAAGGGTGATGGT 118998 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| ||||| ||||| ||||| ||||||||| Sbjct 118997 CTTGCCAGTCAGGGTTTTCACAAAGATCTGCATG 118964 Score = 129 bits (142), Expect = 5e-25 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||||||||| || ||| || || |||||||| ||| || ||||| ||| Sbjct 120544 CAGCACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 120485 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || | |||||| || ||| ||||||||||||| || || || || |||||||||||||| Sbjct 120484 TTCCAACTGTTTGCCGGCGAAGATGAGACGCTGTTGGTCTGGTGGGATGCCCTCCTTGTC 120425 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | || || || || | |||| |||||| | ||| ||||||| ||| | || Sbjct 120424 TTGGATCTTGGCCTTGACGTTCTCGATGGTGTCTGATGGCTCAACCTCGAGGGTGATGGT 120365 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| ||||| ||||| || || ||||||||| Sbjct 120364 CTTGCCTGTCAGGGTTTTGACGAAGATCTGCATG 120331 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | | || ||| | ||||| || |||||||| || |||||||| || | Sbjct 120102 CCTCCACGCAGACGCAGCACAAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 120043 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| ||| || ||||| || |||||| |||| ||||||||||| || || || Sbjct 120042 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCTGGGGGG 119983 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 ||||||||||||||| || || || || | |||| |||||| | ||| || Sbjct 119982 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATGGTGTCTGACGGCTCAACT 119923 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || | || | || ||||| || || ||||| || |||||||||||| Sbjct 119922 TCAAGAGTGATGGTCTTGCCTGTGAGGGTTTTGACGAAAATCTGCATG 119875 Score = 122 bits (134), Expect = 8e-23 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||| | ||||| || ||||| || || |||||||| || || ||||| ||| Sbjct 119860 CAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATC 119801 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || |||||| |||| ||||||||||| || || || |||||||||||||| Sbjct 119800 TTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 119741 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | || || || || | |||| |||||| | |||||| || | ||| | || Sbjct 119740 TTGGATCTTGGCCTTGACATTCTCGATGGTGTCGGATGGCTCGACTTCAAGGGTGATGGT 119681 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 ||||| || || || || ||||| ||||||||| || Sbjct 119680 CTTGCCTGTGAGGGTCTTCACAAAGATCTGCATGCCT 119644 Score = 120 bits (132), Expect = 3e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||| || |||||||| || || ||||| ||| || ||||| || ||| Sbjct 120300 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTGCCA 120241 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||||||||||||||| || || || ||||||||||||||| || || || Sbjct 120240 GCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTG 120181 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | |||||| | ||| ||||||| ||| | || || || ||||| || Sbjct 120180 ACGTTCTCAATGGTGTCTGACGGCTCCACCTCGAGGGTGATGGTCTTCCCTGTCAGGGTC 120121 Query 118722 TTTACAAAAATCTGCATGGCT 118742 || ||||| ||||||||| || Sbjct 120120 TTCACAAAGATCTGCATGCCT 120100 Score = 109 bits (120), Expect = 5e-19 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 118532 CAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAG 118591 |||||||| || ||| || || |||||||| ||| || ||||| ||| || || Sbjct 119399 CAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCATCTTCCAG 119340 Query 118592 CTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAAT 118651 ||| || || || |||||||||||||||| || || || ||||||||||||||| || Sbjct 119339 CTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGAT 119280 Query 118652 TTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCC 118711 || || || | |||| ||||| | |||||| || | ||| | || ||||| Sbjct 119279 CTTGGCCTTGACGTTCTCGATAGTGTCGGATGGCTCGACTTCAAGGGTGATGGTCTTGCC 119220 Query 118712 GGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || ||||| || || ||||||||| Sbjct 119219 TGTGAGGGTTTTGACGAAGATCTGCATG 119192 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || ||| || || |||||||| || || ||||| ||| || Sbjct 119628 ACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 119569 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| |||||||||||||||| || || || ||||||||||||||| Sbjct 119568 AGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGG 119509 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | ||| | ||| || | ||| || || | ||| | || ||| Sbjct 119508 ATCTTGGCCTTCACATTTTCAATGGTATCTGACGGCTCCACTTCTAGGGTGATGGTCTTG 119449 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || || || || || ||||| ||||||||| || Sbjct 119448 CCTGTGAGGGTCTTCACAAATATCTGCATGCCT 119416 >seq317 Length=4125 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||| || |||||||| || || ||||| ||| || ||||| || ||| Sbjct 741 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTCCCA 682 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||||||||||||||| || || || ||||||||||||||| || || || Sbjct 681 GCAAAGATGAGACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTG 622 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| |||||| | ||||||||| | ||| | || ||||| ||||| || Sbjct 621 ACATTCTCGATGGTGTCGGATGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 562 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 561 TTCACAAAGATCTGCAT 545 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| ||| ||||| || || |||||||| ||| || ||||| ||| || Sbjct 1209 ACCAAGTGGAGTGTTGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCT 1150 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||||||||| || || || || ||||||||||||||| Sbjct 1149 AGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 1090 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| | ||| || || | ||| | || ||| Sbjct 1089 ATCTTGGCCTTGACGTTCTCGATGGTGTCAGATGGCTCAACTTCCAGGGTGATGGTCTTG 1030 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || ||||| || || || || ||||||||| Sbjct 1029 CCTGTCAGGGTCTTCACGAAGATCTGCATG 1000 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| || | || |||||||| || |||||||| ||| || ||||| ||| Sbjct 985 CAGCACCAGATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 926 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || | ||| || ||||| |||||||||||||||| || || || |||||||||||||| Sbjct 925 TTCCAACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTC 866 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | || || || || | ||| | |||||| | ||| || || | ||| | || Sbjct 865 TTGGATCTTGGCCTTGACGTTTTCAATGGTGTCAGATGGCTCAACTTCCAGGGTGATGGT 806 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| || || || || || || ||||||||| Sbjct 805 CTTGCCTGTGAGGGTCTTCACGAAGATCTGCATG 772 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || ||| || || |||||||| ||| || ||||| ||| || Sbjct 1437 ACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCA 1378 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||||||||| || || || || ||||||||||||||| Sbjct 1377 AGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGCGGGATGCCCTCCTTGTCTTGG 1318 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| | |||||| || | ||| | || ||| Sbjct 1317 ATCTTGGCCTTGACGTTCTCGATGGTGTCTGATGGCTCGACTTCCAGGGTGATGGTCTTG 1258 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || || || || || ||||||||| Sbjct 1257 CCTGTGAGGGTCTTCACGAAGATCTGCATG 1228 Score = 107 bits (118), Expect = 2e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| || | || ||||| || || |||||||| ||| || ||||| ||| Sbjct 1669 CAGCACCAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 1610 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || | ||| || || || ||||||||||||| || || || || |||||||||||||| Sbjct 1609 TTCCAACTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGTGGGATGCCCTCCTTGTC 1550 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | || || || || | |||| |||||| | ||| || || | ||| | || Sbjct 1549 TTGGATCTTGGCCTTGACGTTCTCGATGGTGTCAGATGGCTCCACTTCCAGGGTGATGGT 1490 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| ||||| ||||| || || ||||||||| Sbjct 1489 CTTGCCTGTCAGGGTTTTAACGAAGATCTGCATG 1456 >seq1001 Length=3733086 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||||||||| || ||| || || |||||||| ||| || ||||| ||| Sbjct 1254393 CAGCACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 1254334 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || || || |||| ||||||||||| || || || |||||||||||||| Sbjct 1254333 TTCCAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 1254274 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | || || || || | |||| |||||| | ||| ||||| | ||| | || Sbjct 1254273 TTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGATGGCTCAACCTCAAGGGTGATGGT 1254214 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||||| || || || || |||||||| Sbjct 1254213 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1254181 >seq1446 Length=3482675 Score = 105 bits (116), Expect = 6e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| ||| || ||||| ||| || ||||| || || ||| |||| Sbjct 1542310 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATC 1542251 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 || |||||||| || || || ||||||||||||||| || || || || | ||| Sbjct 1542250 AGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCG 1542191 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | |||||| | ||| ||||||| ||| | || ||||| ||||| || || || || Sbjct 1542190 ATGGTGTCTGAAGGCTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAG 1542131 Query 118731 ATCTGCAT 118738 |||||||| Sbjct 1542130 ATCTGCAT 1542123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433818196893136