Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1531 194 2e-44 seq1648 114 1e-20 >seq1531 Length=8964412 Score = 194 bits (214), Expect = 2e-44 Identities = 511/772 (66%), Gaps = 10/772 (1%) Strand=Plus/Minus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 ||||| || ||| || || || || | || |||| |||||||| || | || || Sbjct 403547 GACATCACCCCCATCTTCTGGTACTCTCCCACCTTCTTCTCAAAGAAGTTGCTCTTGCCC 403488 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCAT 16048 || | || || || ||||| || ||||| || |||| | || || ||| Sbjct 403487 TCCAGGGAGATGTTCTCCATGAAGTCAAAGGGGTTTTCAGTGTTGTAAATCTTGCTGCAC 403428 Query 16049 CCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAG 16108 ||| || ||| |||||||| || ||||| || |||||||||||||| | || Sbjct 403427 ATCAAGTCTCCCAACAATCTATCTGCTACAAACTCAATATACTGTTTCATCAGGTCTTGA 403368 Query 16109 TTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACC 16168 ||||| || || | || || || | || ||||| ||||| | || || || || || Sbjct 403367 TTCATCCCAATCAGCTTCACGGGAAGGGCGTCTGTCAAAAACTCTTGCTCAATCTTGACG 403308 Query 16169 GCTTCAATGATTATA-TCTCTT-ACTACACTATTTAAC--GGAGGGTTTAATAAGTGTTT 16224 || | || |||| ||| | | || || | | || ||| | | ||| | Sbjct 403307 GC---ACTGTCTATAATCTGGTGAATAT-CTGCCTCGCTTGGCCTGTTAACCAGGTGGCT 403252 Query 16225 AAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGA 16284 |||||| | ||| ||||| ||| |||| || || || || || || | |||||| || Sbjct 403251 AAACATCAGACAGGCAAACTCAGTGTGCATCCCCTCATCTCTGCTGATCAGCTCGTTGGA 403192 Query 16285 AAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACC 16344 || || || |||||||| | ||||| || || | ||| |||||||| ||||| || || Sbjct 403191 GAAAGTCAGCCCTGGCATCAATCCTCTCTTCTTCAACCAGAATATAGCTGCAAAGGACCC 403132 Query 16345 AGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTT-CTAt 16403 ||| || || || ||||| || || || || ||||||| || || || | || || Sbjct 403131 AGAGAAAAAGATCCCTTCCACAGCTGCGAAAGCAACCACACGTTCCCCAAAAGTGGCTCG 403072 Query 16404 ttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCT 16463 || | ||||| | ||||| | || || | || ||||| || ||| Sbjct 403071 CAGGTCTC-CAATCCACCTGAGGGCCCACTCAGCCTTCTTCTTTACACAAGGTGTGGTCT 403013 Query 16464 CTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTA 16523 | ||||||||||| | || ||||| || | ||| ||| || || || || | | Sbjct 403012 CGATTGCATTAAACAGATGCTTTTTCTCATGCGGATCCTCAATGTAGGTGTCGATCAAGA 402953 Query 16524 AACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAG 16583 ||| |||||||| ||||| || ||||| || || ||||| || ||||| ||||| || | Sbjct 402952 GACTGTACATTTCAGAATGGATGTTCTCAATGGCAATCTGGAAGCCATAGAAGCACCTGG 402893 Query 16584 CTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCAT 16643 | |||| | ||| || || ||| || || ||| | | || || | || || |||| Sbjct 402892 CCTCGGTCAATTGCACCTCTTTGTAGAATCTCTCTACCAGATTCTCACTGACGATACCAT 402833 Query 16644 CGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATC 16695 | ||||||||||| || || | |||| || || || | ||||||||| || Sbjct 402832 CACTAGCTGCAAAGAATGCCAAAATGTACTTGATGAAGTGTTTTTCGTTGTC 402781 >seq1648 Length=77580 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16217 AAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAAC 16276 ||||||||||||| | || || || ||||| ||||| || ||||| | ||| |||| Sbjct 8292 AAGTGTTTAAACAACAGGCAGGCGAACTCACAGTGCAAGCCCTCGTCACGACTAATTAGT 8351 Query 16277 TCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCA 16336 || ||||| || || || |||||||| || || ||||| || | ||| || || || ||| Sbjct 8352 TCATTTGAGAAGGTCAGGCCTGGCATCAGCCCGCGTTTCTTTAGCCAGAAAATGGCAGCA 8411 Query 16337 AATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTAC 16396 ||||| || || ||||| | || || || || || || || |||| ||||| ||| | Sbjct 8412 AATGACCCTGAGAAGAAGACTCCCTCCACGGCAGCGAAGGCGACCAGCCGCTCCCCGAAG 8471 Query 16397 GTTCTAtttttactttctatcca 16419 | | | |||||| | ||||| Sbjct 8472 CTGGTGTCTTTACTGGCGATCCA 8494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462498656528800