Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq1531 145 6e-30 >seq1531 Length=8964412 Score = 145 bits (160), Expect = 6e-30 Identities = 425/652 (65%), Gaps = 2/652 (0%) Strand=Plus/Plus Query 19971 AAAAACAGATCGAACCGGAACTGGAACGTTATCTGTATTTGGAATGCAATCTCGATATAA 20030 ||| | ||| || || ||||| || || || ||||| ||||| || | ||| |||| Sbjct 376812 AAAGAGAGACCGTACAGGAACAGGGACCTTGTCTGTTTTTGGTGCCCAGTGTCGCTATAG 376871 Query 20031 CTTGAGAAATGAATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGA 20090 | ||| | |||||||| | || || || || || || |||| ||| ||||| || Sbjct 376872 TCTCAGAGGGCAGTTTCCCTTGCTCACCACAAAGCGTGTGTTCTGGAGAGGGGTTGTCGA 376931 Query 20091 AGAGTTATTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGT 20150 |||| | | ||||| || || || || || | | || ||| || ||| || Sbjct 376932 AGAGCTCCTCTGGTTCGTTCGGGGCTCTACGAACGCCAAGGAACTTTCTGACAAAAAGGT 376991 Query 20151 TAAGATTTGGAGCGCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAACCG 20210 | || ||| || | || || |||| || |||| ||| | || | Sbjct 376992 GCATATATGGGATGCGAACGGTTCGCGAGAATTCTTGGACAGGCGTGGTCTGAACCATTA 377051 Query 20211 TCAAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATA 20270 | | ||||| || |||| || | ||||| || |||||||| || |||||||| ||||| Sbjct 377052 TGAGGAGGGAGACCTGGGCCCCATCTATGGCTTCCAATGGAGGCACTTTGGAGCGGAATA 377111 Query 20271 TGTTGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAA 20330 | || | ||||| | || |||||||| || || || || | || || | Sbjct 377112 TAAGGATAAAAACACTGACTACACGGGACAAGGTGTGGACCAGCTAGCCCAGGTCATCCA 377171 Query 20331 TTTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGA 20390 || || | |||| | ||||| || || || ||| ||| |||||| | ||| Sbjct 377172 CACCATCAAGAATGACCCTCATGACAGGAGGATAATCATATCCGCGTGGAACCCACCAGA 377231 Query 20391 TGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGC-CAATTTTACGTTGCTAATA 20449 ||||| ||||| ||||||| || || | || || || ||||||||| | | Sbjct 377232 CGTGCCCAATATGGCGCTGCCTCCCTGCCACAC-CTTTGTGCAGTTTTACGTTTGTGACG 377290 Query 20450 ATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCA 20509 || | |||||||| |||| || || |||| || || || || || ||||| |||| Sbjct 377291 GCGAGCTCTCGTGTCAGCTGTACCAGCGCTCCGGAGACATTGGCCTCGGCGTTCCGTTCA 377350 Query 20510 ATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGG 20569 | || || || || || || || |||||||| || || | |||| |||| | | Sbjct 377351 ACATCGCCAGCTACAGTCTCCTGACCTATATGATAGCCCACATCACAGGACTAAAGCCTG 377410 Query 20570 GTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGA 20621 | ||||| || |||||| | |||||||||||| | || || |||||||| || Sbjct 377411 GGGACTTTGTACACACCCTGGGAGACGCGCATGTGTATCTCAATCATATCGA 377462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399172771453060