Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1456 122 7e-23 seq1001 122 7e-23 seq1446 118 8e-22 seq317 118 8e-22 >seq1456 Length=293654 Score = 122 bits (134), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || |||||||||||||| |||||||||||| ||| ||| | || ||| Sbjct 120540 ACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 120481 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||||| |||||||| || | ||||||||||| || || | ||||||||||| Sbjct 120480 AACTGTTTGCCGGCGAAGATGAGACGCTGTTGGTCTGGTGGGATGCCCTCCTTGTCTTGG 120421 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| ||| ||||| | ||| || |||||| Sbjct 120420 ATCTTGGCCTTGACGTTCTCGATGGTGTCTGATGGCTCAACCTCGAGGGTGATGGTCTTG 120361 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| || || || ||||| |||||| Sbjct 120360 CCTGTCAGGGTTTTGACGAAGATCTGCATG 120331 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| ||||||||||| ||| ||| | || ||||| || Sbjct 119168 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTG 119109 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| || | ||||| ||||| || || | ||||||||||| || || Sbjct 119108 CTTGCCAGCGAAGATAAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTT 119049 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | |||| ||| ||||| | ||| || |||||||| || Sbjct 119048 GGCCTTGACATTCTCGATGGTGTCGGATGGCTCGACCTCAAGGGTGATGGTCTTGCCAGT 118989 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 ||| || ||||||||||| |||||| Sbjct 118988 CAGGGTTTTCACAAAGATCTGCATG 118964 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || |||||||||||||| ||||||||||| ||| ||| | || ||| Sbjct 119628 ACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 119569 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || || | ||||| ||||| || || | ||||||||||| Sbjct 119568 AGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGG 119509 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | || |||||| || | ||| || |||||| Sbjct 119508 ATCTTGGCCTTCACATTTTCAATGGTATCTGACGGCTCCACTTCTAGGGTGATGGTCTTG 119449 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || ||||||||||| || |||||| Sbjct 119448 CCTGTGAGGGTCTTCACAAATATCTGCATG 119419 Score = 98.7 bits (108), Expect = 8e-16 Identities = 148/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| ||| ||||| ||||||||||| ||| |||| | || |||| Sbjct 120311 CAAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCA 120252 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || || || || || | ||||| ||||| || || | ||||||||||| | Sbjct 120251 GCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGA 120192 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | | | |||| ||||||||| | ||| || ||||| | Sbjct 120191 TCTTGGCCTTGACGTTCTCAATGGTGTCTGACGGCTCCACCTCGAGGGTGATGGTCTTCC 120132 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATG 45337 | ||||| |||||||||||||| |||||| Sbjct 120131 CTGTCAGGGTCTTCACAAAGATCTGCATG 120103 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| ||||||||||| ||| ||| | || ||||| || Sbjct 119851 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTG 119792 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| || | ||||| ||||| || || | ||||||||||| || || Sbjct 119791 CTTGCCAGCGAAGATAAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTT 119732 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | |||| ||| || || | ||| || |||||||| || Sbjct 119731 GGCCTTGACATTCTCGATGGTGTCGGATGGCTCGACTTCAAGGGTGATGGTCTTGCCTGT 119672 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 || |||||||||||||| |||||| Sbjct 119671 GAGGGTCTTCACAAAGATCTGCATG 119647 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 45130 CAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAG 45189 |||||| || |||||||||||||| |||||||||||| || ||| | || ||||| Sbjct 119399 CAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCATCTTCCAG 119340 Query 45190 TTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAAT 45249 || || ||||| || || | ||||| ||||| || || | ||||||||||| || Sbjct 119339 CTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGAT 119280 Query 45250 TTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCC 45309 || ||| || | | | |||| ||| || || | ||| || |||||||| Sbjct 119279 CTTGGCCTTGACGTTCTCGATAGTGTCGGATGGCTCGACTTCAAGGGTGATGGTCTTGCC 119220 Query 45310 CGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || || || ||||| |||||| Sbjct 119219 TGTGAGGGTTTTGACGAAGATCTGCATG 119192 >seq1001 Length=3733086 Score = 122 bits (134), Expect = 7e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || |||||||||||||| |||||||||||| ||| ||| | || ||| Sbjct 1254389 ACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 1254330 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || ||||| || || | ||||| ||||| || || | ||||||||||| Sbjct 1254329 AGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 1254270 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| ||| ||||| | ||| || |||||| Sbjct 1254269 ATCTTGGCCTTGACGTTCTCGATGGTGTCGGATGGCTCAACCTCAAGGGTGATGGTCTTG 1254210 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 || ||||| |||||||| ||||| ||||| || Sbjct 1254209 CCAGTCAGGGTCTTCACGAAGATCTGCATATT 1254178 >seq1446 Length=3482675 Score = 118 bits (130), Expect = 8e-22 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206 ||||||| |||||||||||| ||| ||| | || ||||| || || |||||||| | Sbjct 1542312 CCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGA 1542253 Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266 ||| ||||| ||||| || || | ||||||||||| || || ||| || | Sbjct 1542252 TCAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCT 1542193 Query 45267 CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAA 45326 | | | |||| | ||||||||| | ||| || |||||||||||||| |||||||| | Sbjct 1542192 CGATGGTGTCTGAAGGCTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 1542133 Query 45327 AGATTTGCATGTT 45339 |||| ||||| || Sbjct 1542132 AGATCTGCATATT 1542120 >seq317 Length=4125 Score = 118 bits (130), Expect = 8e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || |||||||||||||| |||||||||||| ||| ||| | || || Sbjct 1437 ACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCA 1378 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || ||||| || || | ||||||||||| || || | ||||||||||| Sbjct 1377 AGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGCGGGATGCCCTCCTTGTCTTGG 1318 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| ||| || |||| ||| || |||||| Sbjct 1317 ATCTTGGCCTTGACGTTCTCGATGGTGTCTGATGGCTCGACTTCCAGGGTGATGGTCTTG 1258 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || |||||||| ||||| |||||| Sbjct 1257 CCTGTGAGGGTCTTCACGAAGATCTGCATG 1228 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||| |||||||||||| ||| ||| | || || Sbjct 1209 ACCAAGTGGAGTGTTGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCT 1150 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || ||||| || || | ||||||||||| || || | ||||||||||| Sbjct 1149 AGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 1090 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| ||| || |||| ||| || |||||| Sbjct 1089 ATCTTGGCCTTGACGTTCTCGATGGTGTCAGATGGCTCAACTTCCAGGGTGATGGTCTTG 1030 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| |||||||| ||||| |||||| Sbjct 1029 CCTGTCAGGGTCTTCACGAAGATCTGCATG 1000 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| |||||||||||| ||| ||| | || |||| || || ||||| || Sbjct 1648 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAACTGCTTGCCGGCAAA 1589 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | ||||||||||| || || | ||||||||||| || || ||| || Sbjct 1588 GATGAGACGCTGTTGGTCTGGTGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTT 1529 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | |||| |||||| |||| ||| || |||||||| ||||| || || || Sbjct 1528 CTCGATGGTGTCAGATGGCTCCACTTCCAGGGTGATGGTCTTGCCTGTCAGGGTTTTAAC 1469 Query 45325 AAAGATTTGCATG 45337 ||||| |||||| Sbjct 1468 GAAGATCTGCATG 1456 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/211 (70%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| ||| ||||| ||||||||||| ||| ||| | || |||| Sbjct 752 CAAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCA 693 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || || || || || | ||||| ||||| || || | ||||||||||| | Sbjct 692 GCTGCTTCCCAGCAAAGATGAGACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGGA 633 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | | | |||| ||| ||||| | ||| || ||||||| Sbjct 632 TCTTGGCCTTGACATTCTCGATGGTGTCGGATGGCTCGACCTCAAGGGTGATGGTCTTGC 573 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 | ||||| |||||||||||||| ||||| || Sbjct 572 CAGTCAGGGTCTTCACAAAGATCTGCATATT 542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395064087028468