Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq1531 221 1e-52 >seq1531 Length=8964412 Score = 221 bits (244), Expect = 1e-52 Identities = 589/889 (66%), Gaps = 16/889 (2%) Strand=Plus/Minus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || ||||| || || || || | || | || ||||||||||| | || || Sbjct 403547 GACATCACCCCCATCTTCTGGTACTCTCCCACCTTCTTCTCAAAGAAGTTGCTCTTGCCC 403488 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT-----GTTGACATAAACACTTTAT 14012 ||||| || || || ||||| || ||||| || ||| |||| |||| ||| | Sbjct 403487 TCCAGGGAGATGTTCTCCATGAAGTCAAAGGGGTTTTCAGTGTTG---TAAAT-CTTGCT 403432 Query 14013 -CACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAA 14071 |||| | ||| || | |||||||| || | ||||||||||| || ||| | Sbjct 403431 GCACATCA-AGT-CTCCCAACAATCTATCTGCTACAAACTCAATATACTGTTTCATCAGG 403374 Query 14072 TCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATA 14131 || |||||| || || || || || |||| | || ||||| |||| || || Sbjct 403373 TCTTGATTCATCCCAATCAGCTTCACGGGAAGGGCGTCTGTCAAAAACTCTTGCTCAATC 403314 Query 14132 GACACAGCCTCGTTTATAATAATCGT-AATAATTTCATTAGAAGGAGGATATTTTAGATG 14190 || || || |||||| | || |||| | | | || | || || Sbjct 403313 TTGACGGCACTGTCTATAATC-TGGTGAATATCTGCCTCGCTTGGCCTGTTAACCAGGTG 403255 Query 14191 TTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTT 14250 |||| || | ||| ||||| ||| || | ||||||||||| || || || ||||| Sbjct 403254 GCTAAACATCAGACAGGCAAACTCAGTGTGCATCCCCTCATCTCTGCTGATCAGCTCGTT 403195 Query 14251 TGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGA 14310 || || || | |||||||||||||||| || || ||||| ||||| || || || || Sbjct 403194 GGAGAAAGTCAGCCCTGGCATCAATCCTCTCTTCTTCAACCAGAATATAGCTGCAAAGGA 403135 Query 14311 TCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGC 14370 || || || || || || || || || || || || | | ||||| ||||| | || Sbjct 403134 CCCAGAGAAAAAGATCCCTTCCACAGCTGCGAAAGCAACCACACGTTCCCCAAAAGTGGC 403075 Query 14371 TTTTTTGT-TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTG 14429 | || || | ||||| | ||||| |||| || || || | | || | | Sbjct 403074 TCGCAGGTCTCCA-ATCCACCTGAGGGCCCACTCAGCCTTCTTCTTTACACAAGGTGTGG 403016 Query 14430 TTTCAATAGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAA 14489 | || || |||||||| | ||| | ||||| | | | |||||| || || || | Sbjct 403015 TCTCGATTGCATTAAACAGATGCTTTTTCTCATGCGGATCCTCAATGTAGGTGTCGATCA 402956 Query 14490 GTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATC 14549 | || ||||||||||| || ||||| || || || ||||| || ||||| || || | Sbjct 402955 AGAGACTGTACATTTCAGAATGGATGTTCTCAATGGCAATCTGGAAGCCATAGAAGCACC 402896 Query 14550 TAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATAC 14609 | || || | | |||| |||||| ||| ||||| || ||| ||| ||| | || |||| Sbjct 402895 TGGCCTCGGTCAATTGCACCTCTTTGTAGAATCTCTCTACCAGATTCTCACTGACGATAC 402836 Query 14610 CATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGA 14669 |||||||||||||||| |||||||| |||| || || |||| || || | | ||| Sbjct 402835 CATCACTAGCTGCAAAGAATGCCAAAATGTACTTGATGAAGTGTTTTTCGTTGTCAGTGA 402776 Query 14670 GTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAG 14729 | | |||||| | | || |||||| | |||||||| || |||||| || | Sbjct 402775 GACTCCTCCAATGGTCCAAGTCCTTACCTATGTCTACTTCCTCCGTTGTCCAGAATGACG 402716 Query 14730 CAACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAA 14778 | || || || || ||||| | ||| || || | | ||||||||| Sbjct 402715 CCACGGCCTTCTTGTACATGAACCAGATGTCGTGGTTCTGTATAGGAAA 402667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482331684329440