Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq317 132 4e-26 seq1456 114 1e-20 seq1001 107 2e-18 seq1446 98.7 9e-16 seq2197 86.0 6e-12 seq1787 86.0 6e-12 >seq317 Length=4125 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || |||||||| || |||||| | || ||||| || || Sbjct 772 CATGCAGATCTTCGTGAAGACCCTCACAGGCAAGACCATCACCCTGGAAGTTGAGCCATC 831 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| ||||| | || |||||||| ||| | ||||| ||||| Sbjct 832 TGACACCATTGAAAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCGCCAGACCA 891 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || |||||||| ||||||||||| || || ||| || || Sbjct 892 GCAGCGTCTCATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGCACCCTGTCCGACTACAA 951 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || ||||| || || ||||||||||| || Sbjct 952 CATCCAGAAAGAGTCAACCCTTCATCTGGTGCT 984 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || || || ||||| ||||| ||||| || |||||| | || || || || Sbjct 541 AAATATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCC 600 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||||| |||| | ||||| | || |||||||| ||| | ||||| || Sbjct 601 ATCCGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCGCCAGA 660 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 |||||||||||| || || ||||| || ||| ||||||| || || || || Sbjct 661 CCAGCAGCGTCTCATCTTTGCTGGGAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTA 720 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || ||||| || || |||||||| || || Sbjct 721 CAACATCCAGAAAGAGTCCACCCTTCATCTTGTCCT 756 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| || || ||||||||||| || |||||| | || || || || || Sbjct 1456 CATGCAGATCTTCGTTAAAACCCTGACAGGCAAGACCATCACCCTGGAAGTGGAGCCATC 1515 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| | || |||||||| ||| | || || ||||| Sbjct 1516 TGACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCACCAGACCA 1575 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||||| || || || ||||| ||||||||||| || || ||| || || Sbjct 1576 ACAGCGTCTCATCTTTGCCGGCAAGCAGTTGGAAGATGGCCGCACCCTGTCCGACTACAA 1635 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || || ||||||||||| || Sbjct 1636 CATCCAGAAGGAGTCAACCCTTCATCTGGTGCT 1668 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||||||||| || |||||| | || ||||| || || Sbjct 1000 CATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAAGTTGAGCCATC 1059 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| | || |||||||| ||| | || || ||||| Sbjct 1060 TGACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCA 1119 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || || || ||||| ||| | ||||| Sbjct 1120 ACAGCGTCTCATCTTTGCCGGCAAGCAGCTAGAAGA 1155 >seq1456 Length=293654 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| |||||||| || || |||||| |||| || || ||||| Sbjct 120103 CATGCAGATCTTTGTGAAGACCCTGACAGGGAAGACCATCACCCTCGAGGTGGAGCCGTC 120162 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| | || |||||||| ||| | || || ||||| Sbjct 120163 AGACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCA 120222 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || |||||||| ||| ||||||| | || || || || || Sbjct 120223 GCAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAA 120282 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || ||||| || || |||||||| || || Sbjct 120283 CATCCAGAAAGAGTCCACCCTTCATCTTGTCCT 120315 Score = 114 bits (126), Expect = 1e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| || || ||||||||||| || |||||| |||| ||||| || || Sbjct 120331 CATGCAGATCTTCGTCAAAACCCTGACAGGCAAGACCATCACCCTCGAGGTTGAGCCATC 120390 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| | || |||||||| ||| | || || ||||| Sbjct 120391 AGACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCACCAGACCA 120450 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || ||||| ||||||||||||||||| Sbjct 120451 ACAGCGTCTCATCTTCGCCGGCAAACAGTTGGAAGA 120486 Score = 105 bits (116), Expect = 6e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| || |||||||| || |||||| | || || || || || Sbjct 119647 CATGCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACCCTTGAAGTCGAGCCATC 119706 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | ||||| | || |||||||| ||| | || || ||||| Sbjct 119707 CGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCA 119766 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||||||| || ||||||||||| ||| ||||||| Sbjct 119767 GCAGCGTCTTATCTTCGCTGGCAAGCAGCTGGAAGA 119802 Score = 105 bits (116), Expect = 6e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||| || || || |||||||| || ||||| | || ||||| ||||| Sbjct 119875 CATGCAGATTTTCGTCAAAACCCTCACAGGCAAGACCATCACTCTTGAAGTTGAGCCGTC 119934 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | || || | || |||||||| ||| | || || ||||| Sbjct 119935 AGACACCATCGAGAACGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCA 119994 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||||||| || ||||||||||| ||| ||||||| Sbjct 119995 GCAGCGTCTTATCTTCGCTGGCAAGCAGCTGGAAGA 120030 Score = 102 bits (112), Expect = 7e-17 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||||| || || || || || ||||| ||||| || |||||| | || || || || Sbjct 118961 AATCATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCC 119020 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||||| |||| | ||||| | || |||||||| ||| | || || || Sbjct 119021 ATCCGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGA 119080 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||||||| || ||||||||||| ||| ||||||| Sbjct 119081 CCAGCAGCGTCTTATCTTCGCTGGCAAGCAGCTGGAAGA 119119 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| || || || |||||||| || |||||| | || || || || || Sbjct 119192 CATGCAGATCTTCGTCAAAACCCTCACAGGCAAGACCATCACCCTTGAAGTCGAGCCATC 119251 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | |||| | ||||| | || |||||||| ||| | || || ||||| Sbjct 119252 CGACACTATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCA 119311 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||||||| || || || ||||| ||| ||||||| Sbjct 119312 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAAGA 119347 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| || |||||||| || |||||| | || || || ||||| Sbjct 119419 CATGCAGATATTTGTGAAGACCCTCACAGGCAAGACCATCACCCTAGAAGTGGAGCCGTC 119478 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | |||| || || | || |||||||| ||| | || || ||||| Sbjct 119479 AGATACCATTGAAAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCACCAGACCA 119538 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||||||| || || |||||||| ||| ||||||| Sbjct 119539 GCAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGA 119574 >seq1001 Length=3733086 Score = 107 bits (118), Expect = 2e-18 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || ||||| ||||| ||||| ||||| || |||||| | || ||||| || Sbjct 1254177 AAATATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCC 1254236 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||||| |||| | ||||| | || |||||||| ||| | || || || Sbjct 1254237 ATCCGACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGA 1254296 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||||||| || || || ||||| ||| ||||||| Sbjct 1254297 CCAGCAGCGTCTTATCTTTGCCGGCAAGCAGCTGGAAGA 1254335 >seq1446 Length=3482675 Score = 98.7 bits (108), Expect = 9e-16 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || ||||| ||||| ||||| ||||| || |||||| |||| || || || Sbjct 1542119 AAATATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGCC 1542178 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| |||| | || || | || |||||||| ||| | || || || Sbjct 1542179 TTCAGACACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCACCAGA 1542238 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||||||| || || ||||| ||||| ||| ||||||| Sbjct 1542239 CCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAAGA 1542277 >seq2197 Length=5472366 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 23285 CAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCA--CATTGAGTCATTTT 23342 ||||| | |||||||| | | |||||||||||| |||| || | || | || Sbjct 5038366 CAGTCCTCGAGGCCGGGACACTCGTGCGGACACATGAGCGTCCAGTCACC-ATTC-TCTT 5038309 Query 23343 CAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCA 23402 | || || |||| || || ||||| ||||| | ||||||||||| || || |||||| Sbjct 5038308 CCACACGCTTCATGAACAGGTCCGGGATCCACATGGCGTAGAACAGGTCTCGTGCGCGCT 5038249 Query 23403 CCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACG 23462 |||||| || || ||||||||| |||| || || || | ||| || ||||| | Sbjct 5038248 GCTCCTCCTTCCCCGTGTTCTTTCGAGCGTCCAGGAACTCGAAGATGTCTGCGTGCCAAG 5038189 Query 23463 GCTCGAGGTAAACGGCAAACGCGCCCGG 23490 |||| ||||| | || || || || || Sbjct 5038188 GCTCCAGGTACATAGCGAAGGCACCAGG 5038161 >seq1787 Length=2284422 Score = 86.0 bits (94), Expect = 6e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCA 57566 ||||| || || ||| ||||| ||||| | |||||||| || || || | || | Sbjct 1961081 GATGAGCCCCTCCTGCGTGAGAACCCCCGGCGCTTTGTCATCTTCCCCATCCAGTACCAC 1961022 Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 ||||| ||| | |||||||| ||||| || ||||| || ||||| | || ||||||||| Sbjct 1961021 GACATCTGGCAGATGTACAAGAAGGCTGAGGCATCCTTCTGGACAGCGGAGGAAGTAGAC 1960962 Query 57627 CTGTCTAAGG 57636 || || |||| Sbjct 1960961 CTCTCCAAGG 1960952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445753539639360