Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1531 138 2e-27 >seq1531 Length=8964412 Score = 138 bits (152), Expect = 2e-27 Identities = 369/560 (66%), Gaps = 8/560 (1%) Strand=Plus/Plus Query 35223 TTCCAGTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGT 35282 |||| | ||||| || ||| | ||||||||||| ||||| ||||| ||| |||| Sbjct 376886 TTCCCTTGCTCACCACAAAGCGTGTGTTCTGGAGAGGGGTTGTCGAAGAGCTCCTCTGGT 376945 Query 35283 TCATCAGGGGCAATACAGACGCCAAAGAATTGGCCAAGAAGAAGATACACATCTGGAACG 35342 || | ||||| ||| ||||||| ||| | | | || ||| | || || ||| | | Sbjct 376946 TCGTTCGGGGCTCTACGAACGCCAAGGAACTTTCTGACAAAAAGGTGCATATATGGGATG 377005 Query 35343 CTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCAGAGGGAGATT 35402 | || || ||||| ||||| |||||||| | || | || || | |||||||| Sbjct 377006 CGAACGGTTCGCGAGAATTCTTGGACAGGCGTGGTCTGAACCATTATGAGGAGGGAGACC 377065 Query 35403 TGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATAT---GATACCTGTT 35459 |||| ||| | || || ||||||||| | || ||||| || |||||| |||| Sbjct 377066 TGGGCCCCATCTATGGCTTCCAATGGAGGCACTTTGGAGCGGAATATAAGGATAAAAACA 377125 Query 35460 CTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTGAGAG 35519 || || || || ||| | ||| | || || | ||| | | | | ||| | | || Sbjct 377126 CT---GACTACACGGGACAAGGTGTGGACCAGCTAGCCCAGGTCATCCACACCATCA-AG 377181 Query 35520 AA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTT 35578 || | || |||| || ||||| || || | || ||||| || || | | | | Sbjct 377182 AATGACCCTCATGACAGGAGGATAATCATATCCGCGTGGAACCCACCAGACGTGCCCAAT 377241 Query 35579 ATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGTCG 35638 ||||| || ||||| ||||||| || || ||||| || | | || || | ||| Sbjct 377242 ATGGCGCTGCCTCCCTGCCACACCTTTGTGCAGTTTTACGTTTGTGACGGCGAGCTCTCG 377301 Query 35639 TGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCA 35698 || ||| |||| ||||| |||||| | || | ||||| || ||||| || || Sbjct 377302 TGTCAGCTGTACCAGCGCTCCGGAGACATTGGCCTCGGCGTTCCGTTCAACATCGCCAGC 377361 Query 35699 TACTCTCTTCTGACTCATCTGATGGCCAGTATGGTGGGTCTAAAACCGGGAGAGTTTATC 35758 ||| ||| ||||| || |||| ||| || || ||||| || || || ||| | Sbjct 377362 TACAGTCTCCTGACCTATATGATAGCCCACATCACAGGACTAAAGCCTGGGGACTTTGTA 377421 Query 35759 CTCACTCTTGGTGACGCACA 35778 | ||| || || ||||| || Sbjct 377422 CACACCCTGGGAGACGCGCA 377441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989554736764140