Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1531 212 6e-50 seq1648 116 3e-21 >seq1531 Length=8964412 Score = 212 bits (234), Expect = 6e-50 Identities = 589/893 (66%), Gaps = 19/893 (2%) Strand=Plus/Minus Query 11329 CACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTA 11387 |||||||||||| || || || | || | || | || || || || |||| || || | Sbjct 403542 CACCCCCATCTTCTGGTACTCTCCCAC-CTTCTTCTCAAAGAAGTTGCTCTTGCCCTCCA 403484 Query 11388 GTGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTT--TTCACAACC 11445 | || || | |||||| ||| ||| || || | ||| | | || | |||| | Sbjct 403483 GGGAGATGTTCTCCATGAAGTCAAAGGGGTTTTCAGTGTTGTAAATCTTGCTGCACATC- 403425 Query 11446 TAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATT 11505 || ||| || ||||||||||| || || || |||||||| ||| | ||| Sbjct 403424 -AAGTCTCCCAACAATCTATCTGCTACAAACTCAATATACTGTTTCATCAGGTCTTGATT 403366 Query 11506 CATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGC 11565 ||| || || || | ||| |||| || ||||||||||||| | || || || || || Sbjct 403365 CATCCCAATCAGCTTCACGGGAAGGGCGTCTGTCAAAAACTCTTGCTCAATCTTGACGGC 403306 Query 11566 A---TCAATGAT-TATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAA 11621 | || || || | || ||| || ||| ||| | | | || ||| Sbjct 403305 ACTGTCTATAATCTGGTGA----ATATCTGCCTCGCTTGGCCTGTTAACCAGGTGGCTAA 403250 Query 11622 ACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAA 11681 |||| | ||| ||||| ||| || | || || ||||| || || || || || || | Sbjct 403249 ACATCAGACAGGCAAACTCAGTGTGCATCCCCTCATCTCTGCTGATCAGCTCGTTGGAGA 403190 Query 11682 ATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAG 11741 | || | || ||||||||||||| || || | ||| |||||||| ||||| || |||| Sbjct 403189 AAGTCAGCCCTGGCATCAATCCTCTCTTCTTCAACCAGAATATAGCTGCAAAGGACCCAG 403130 Query 11742 AAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TACCTTGTT 11799 | || || || || ||||||||||| || || || || | ||| ||| | | || | Sbjct 403129 AGAAAAAGATCCCTTCCACAGCTGCGAAAGCAACCACACGTTCCCCAAAAGTGGCTCGCA 403070 Query 11800 G--CTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCT 11857 | || | ||||| | |||||| ||||| ||||| ||||| || | || || Sbjct 403069 GGTCTCCA-ATCCACCTGAGGGCCCACTCAGCCTTCTTCTTTACACAAGGTGTGGTCTCG 403011 Query 11858 ATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAA 11917 || || ||||| | |||| |||| || ||| | || || || || || | | Sbjct 403010 ATTGCATTAAACAGATGCTTTTTCTCATGCGGATCCTCAATGTAGGTGTCGATCAAGAGA 402951 Query 11918 CTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCC 11977 || |||||||| ||||| || || || || || || || || |||||||| || | ||| Sbjct 402950 CTGTACATTTCAGAATGGATGTTCTCAATGGCAATCTGGAAGCCATAGAAGCACCTGGCC 402891 Query 11978 TCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCA 12037 || | | || || || || ||||| || | | ||||||| | || ||||||||| Sbjct 402890 TCGGTCAATTGCACCTCTTTGTAGAATCTCTCTACCAGATTCTCACTGACGATACCATCA 402831 Query 12038 CTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTA 12097 |||| |||||| ||||| | || | || || |||| |||||||| | ||| | | Sbjct 402830 CTAGCTGCAAAGAATGCCAAAATGTACTTGATGAAGTGTTTTTCGTTGTCAGTGAGACTC 402771 Query 12098 TCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACT 12157 ||||| || || || || || |||||||| || ||||| || ||||| Sbjct 402770 CTCCAATGGTCCAAGTCCTTACCTATGTCTACTTCCTCCGTTGTCCAGAATGACGCCACG 402711 Query 12158 GATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAA 12210 | | || ||||| |||||| || || | || ||||| || || ||||| Sbjct 402710 GCCTTCTTGTACATGAACCAGATGTCGTGGTTCTGTATAGGAAAGATGACGAA 402658 >seq1648 Length=77580 Score = 116 bits (128), Expect = 3e-21 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 11612 AAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGT 11671 || |||||||||| | || || || ||||| || || || ||||| | ||| |||||| Sbjct 8292 AAGTGTTTAAACAACAGGCAGGCGAACTCACAGTGCAAGCCCTCGTCACGACTAATTAGT 8351 Query 11672 TCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCA 11731 ||||| || || || | || ||||||| || ||||| |||| ||| || || |||||| Sbjct 8352 TCATTTGAGAAGGTCAGGCCTGGCATCAGCCCGCGTTTCTTTAGCCAGAAAATGGCAGCA 8411 Query 11732 AATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTAC 11775 ||||| || || ||||| | ||||||||| || || || || || Sbjct 8412 AATGACCCTGAGAAGAAGACTCCCTCCACGGCAGCGAAGGCGAC 8455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468511283059520