Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1531 322 6e-83 seq1787 91.5 2e-13 >seq1531 Length=8964412 Score = 322 bits (356), Expect = 6e-83 Identities = 615/900 (68%), Gaps = 11/900 (1%) Strand=Plus/Minus Query 35852 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 35911 ||||| || ||||| || ||||| || ||||| || || || || || | || || Sbjct 403547 GACATCACCCCCATCTTCTGGTACTCTCCCACCTTCTTCTCAAAGAAGTTGCTCTTGCCC 403488 Query 35912 TCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAAT 35971 || | || || || |||||||| || || || || | || ||||| || | | Sbjct 403487 TCCAGGGAGATGTTCTCCATGAAGTCAAAGGGGTTTTCAGTGTTGTAAATCTTGCTGCAC 403428 Query 35972 CCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAA 36031 ||| || | |||||||||||| ||||| || ||||| |||||||| || | Sbjct 403427 ATCAAGTCTCCCAACAATCTATCTGCTACAAACTCAATATACTGTTTCATCAGGTCTTGA 403368 Query 36032 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 36091 ||||| || || || || || ||||| || | || | ||| ||||| ||||| ||| Sbjct 403367 TTCATCCCAATCAGCTTCACGGGAAGGGCGTCTGTCAAAAACTCTTGCTCAATCTTGACG 403308 Query 36092 GCGTCTGT-TATAATA--GATATTA-CTGTTTCTTCACTCGGTGGATACAATAAATGTTT 36147 || |||| |||||| | | || ||| | || || || | | | || | Sbjct 403307 GCA-CTGTCTATAATCTGGTGAATATCTG---CCTCGCTTGGCCTGTTAACCAGGTGGCT 403252 Query 36148 AAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGA 36207 |||||||| ||| || || || ||| | ||||| ||||| || || | |||||||| Sbjct 403251 AAACATCAGACAGGCAAACTCAGTGTGCATCCCCTCATCTCTGCTGATCAGCTCGTTGGA 403192 Query 36208 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCC 36267 || || || || ||||| | || | ||| || | ||| ||||| | ||||| || || Sbjct 403191 GAAAGTCAGCCCTGGCATCAATCCTCTCTTCTTCAACCAGAATATAGCTGCAAAGGACCC 403132 Query 36268 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT 36327 ||| || || || ||||| || || || || |||| | | || ||| || ||| | Sbjct 403131 AGAGAAAAAGATCCCTTCCACAGCTGCGAAAGCAACCACACGTTCCCCAAAAGTGGCTCG 403072 Query 36328 ---GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 36384 ||| |||||| | | ||||| || |||||||| ||||||||||| | ||||| Sbjct 403071 CAGGTCTCCAATCCACCTGAGGGCCCACTCAGCCTTCTTCTTTACACAAGGTGTGGTCTC 403012 Query 36385 TATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAG 36444 || |||||||| |||| ||||| |||| ||| | || || || || ||||| || Sbjct 403011 GATTGCATTAAACAGATGCTTTTTCTCATGCGGATCCTCAATGTAGGTGTCGATCAAGAG 402952 Query 36445 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGC 36504 ||| |||||||| ||||| ||||| |||||||| || || || || ||||| || || || Sbjct 402951 ACTGTACATTTCAGAATGGATGTTCTCAATGGCAATCTGGAAGCCATAGAAGCACCTGGC 402892 Query 36505 CTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 36564 |||||| | || || ||| | | |||| ||| | | ||| ||| | || || || || Sbjct 402891 CTCGGTCAATTGCACCTCTTTGTAGAATCTCTCTACCAGATTCTCACTGACGATACCATC 402832 Query 36565 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTT 36624 ||| |||||||| || ||||| | | || || || | ||||||||| || || | Sbjct 402831 ACTAGCTGCAAAGAATGCCAAAATGTACTTGATGAAGTGTTTTTCGTTGTCAGTGAGACT 402772 Query 36625 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 36684 |||||| | | || ||| ||| || ||||| ||| |||||| ||||| ||| | Sbjct 402771 CCTCCAATGGTCCAAGTCCTTACCTATGTCTACTTCCTCCGTTGTCCAGAATGACGCCAC 402712 Query 36685 TGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATT 36744 ||||| || ||||| ||||||||| || | || || ||||| || || || | ||| Sbjct 402711 GGCCTTCTTGTACATGAACCAGATGTCGTGGTTCTGTATAGGAAAGATGACGAAGCGATT 402652 >seq1787 Length=2284422 Score = 91.5 bits (100), Expect = 2e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 36149 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 36208 ||||||| || || || || ||||| |||||||||||||| || || | |||||||| Sbjct 1959411 AACATCAGGCAGGCAAAGTCACAGTGCAGACCCTCGTCTCTGCTGATCAGCTCGTTGGAG 1959470 Query 36209 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 36268 ||||| || || ||||| || || | ||| || ||||| || || | ||||| || || Sbjct 1959471 AACGTCAGCCCAGGCATCAGACCTCTCTTCTTCAGCCAGAAAATAGCAGCAAAGGAACCT 1959530 Query 36269 GAAAAGAAAA 36278 |||| || || Sbjct 1959531 GAAATGACAA 1959540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658153811714720