Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq1531 178 1e-39 seq1224 89.7 4e-13 >seq1531 Length=8964412 Score = 178 bits (196), Expect = 1e-39 Identities = 397/590 (67%), Gaps = 12/590 (2%) Strand=Plus/Minus Query 20946 TAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGA 21005 || || || ||||| |||| |||||| |||||||| || || | || || |||| ||| Sbjct 377447 TACACATGCGCGTCTCCCAGGGTGTGTACAAAGTCCCCAGGCTTTAGTCCTGTGATGTGG 377388 Query 21006 GCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATG 21065 || |||| ||| |||||||| ||||||||||||||| ||||| || |||||||| ||| Sbjct 377387 GCTATCATATAGGTCAGGAGACTGTAGCTGGCGATGTTGAACGGAACGCCGAGGCCAATG 377328 Query 21066 TCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACAC 21125 || |||| | |||||||||||| || || ||||| || | ||||||||||| ||| Sbjct 377327 TCTCCGGAGCGCTGGTACAGCTGACACGAGAGCTCGCCGTCACAAACGTAAAACTG-CAC 377269 Query 21126 AAAAC-GTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACAT 21184 ||| ||| || ||||| || ||||| | | ||| | |||||||||||| | || Sbjct 377268 AAAGGTGTGGCAGGGAGGCAGCGCCATATTGGGCACGTCTGGTGGGTTCCACGCGGATAT 377209 Query 21185 AACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATCCACCACGTAACGCAGCTGGTC 21244 | || | || || || || | || || | | || | |||||||| Sbjct 377208 GATTATCCTCCTGTCATGAGGGTCATTCTTGATGGTGTGGATGACCTGGGCTAGCTGGTC 377149 Query 21245 CACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCCA 21304 ||| || || ||| ||||| | || || | || ||||| ||||| || ||||| Sbjct 377148 CACACCTTGTCCCGTGTAGTCAGTGTTTTTATCCTTATATTCCGCTCCAAAGTGCCTCCA 377089 Query 21305 CTGGAACCCGTACACCGGCCCCAGATCGC---CCTCGCGGCGGTCCCCGAAGCCCTGCGC 21361 ||||| || || | || ||||| || | |||| ||| | || || ||| Sbjct 377088 TTGGAAGCCATAGATGGGGCCCAGGTCTCCCTCCTCATAATGGTTC----AGACC-ACGC 377034 Query 21362 C--GCCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGCCGCGGCGCGACAGT 21419 | |||| || | || || |||| ||| ||||| || | || | || ||| Sbjct 377033 CTGTCCAAGAATTCTCGCGAACCGTTCGCATCCCATATATGCACCTTTTTGTCAGAAAGT 376974 Query 21420 TCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTCCACGACGCCCCTCCAA 21479 || ||| || || ||||||| | ||||| || | ||| || || || || ||||| Sbjct 376973 TCCTTGGCGTTCGTAGAGCCCCGAACGAACCAGAGGAGCTCTTCGACAACCCCTCTCCAG 376914 Query 21480 AACACCCTTTTGGTGGTTAACAGAGGAAACTCGTCCCTGAGGTTATATCG 21529 ||||| | || ||||| | || ||||||| | ||||| |||| || Sbjct 376913 AACACACGCTTTGTGGTGAGCAAGGGAAACTGCCCTCTGAGACTATAGCG 376864 >seq1224 Length=3633418 Score = 89.7 bits (98), Expect = 4e-13 Identities = 119/163 (73%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 20991 AGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGG 21050 || || |||| ||| | ||||| || || ||||| | ||||||||||||||| || || Sbjct 3005369 AGTCCTGTGATGTGGGTGATCATGTAGGTGAGGAGAGAGTAGCTGGCGATGTTGAAGGGT 3005310 Query 21051 ACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCC 21110 || ||||| ||| |||| | || | |||||||||||| || ||||| || || | Sbjct 3005309 ACGCCGAGTCCCGTGTCTCCCGAGCGCTGGTACAGCTGACACGACAGTTCTCCGTTACAT 3005250 Query 21111 ACGTAAAACT-GACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 || || |||| |||| || |||| || || || | |||||| Sbjct 3005249 ACATAGAACTGGACA-AAGGCGTGGCAGGGTGGCAACGCCATC 3005208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427763967195840