Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq1787 109 4e-19 seq1648 107 1e-18 >seq1787 Length=2284422 Score = 109 bits (120), Expect = 4e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 22778 TTTCTGGGTCATTTGCGGCCATATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGG 22837 |||| || || ||||| || || |||||||||||||| | || ||||| ||| || Sbjct 1959534 TTTCAGGTTCCTTTGCTGCTATTTTCTGGCTGAAGAAGAGAGGTCTGATGCCTGGGCTGA 1959475 Query 22838 CGTTTTCCAACGAGTTGATTAGCCGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGC 22897 |||| ||||||||| |||| ||| | ||||| ||||| |||||||||||||| || || Sbjct 1959474 CGTTCTCCAACGAGCTGATCAGCAGAGACGAGGGTCTGCACTGTGACTTTGCCTGCCTGA 1959415 Query 22898 TGTTTAGGCAAATGGCAAACAAACC 22922 |||| || || ||| ||||| || Sbjct 1959414 TGTTCAGCCACTTGGTGAACAAGCC 1959390 >seq1648 Length=77580 Score = 107 bits (118), Expect = 1e-18 Identities = 116/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 ||||| || || || || || ||| | || || ||||||||||| ||||| |||||||| Sbjct 8452 GCCTTCGCTGCCGTGGAGGGAGTCTTCTTCTCAGGGTCATTTGCTGCCATTTTCTGGCTA 8393 Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAA 22869 |||||||| ||| |||||||| || | || || || || | ||||| |||||||| Sbjct 8392 AAGAAACGCGGGCTGATGCCAGGCCTGACCTTCTCAAATGAACTAATTAGTCGTGACGAG 8333 Query 22870 GGTCTACACTGTGACTTTGCTTGTATGCTGTTTA 22903 || | |||||||| || || || || |||||| Sbjct 8332 GGCTTGCACTGTGAGTTCGCCTGCCTGTTGTTTA 8299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356223579594124