Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1531 365 6e-96 seq1648 154 2e-32 seq1787 98.7 1e-15 >seq1531 Length=8964412 Score = 365 bits (404), Expect = 6e-96 Identities = 621/897 (69%), Gaps = 5/897 (1%) Strand=Plus/Minus Query 49654 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 49713 ||||| || ||||| || ||||| || ||||| || || || || || | || || Sbjct 403547 GACATCACCCCCATCTTCTGGTACTCTCCCACCTTCTTCTCAAAGAAGTTGCTCTTGCCC 403488 Query 49714 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 49773 |||| || || || |||||||| ||||| || || | || ||||| || | | Sbjct 403487 TCCAGGGAGATGTTCTCCATGAAGTCAAAGGGGTTTTCAGTGTTGTAAATCTTGCTGCAC 403428 Query 49774 CCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAA 49833 ||| || | ||||||||| || ||||| || ||||| |||||||| || | Sbjct 403427 ATCAAGTCTCCCAACAATCTATCTGCTACAAACTCAATATACTGTTTCATCAGGTCTTGA 403368 Query 49834 TTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACC 49893 ||||| || || || || || ||||| || | || | ||| ||||| ||||| || Sbjct 403367 TTCATCCCAATCAGCTTCACGGGAAGGGCGTCTGTCAAAAACTCTTGCTCAATCTTGACG 403308 Query 49894 GCATCTGT-TATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAA 49952 ||| |||| |||||| || | | || || || | | | || |||| Sbjct 403307 GCA-CTGTCTATAATCTGGTGAATATCTGCCTCGCTTGGCCTGTTAACCAGGTGGCTAAA 403249 Query 49953 CATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAA 50012 ||||| ||| || || || ||||| ||||| ||||| || || || |||||||| || Sbjct 403248 CATCAGACAGGCAAACTCAGTGTGCATCCCCTCATCTCTGCTGATCAGCTCGTTGGAGAA 403189 Query 50013 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGA 50072 || || || ||||| | || | ||| || | ||| ||||| | ||||| |||||||| Sbjct 403188 AGTCAGCCCTGGCATCAATCCTCTCTTCTTCAACCAGAATATAGCTGCAAAGGACCCAGA 403129 Query 50073 AAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCT--- 50129 || ||||| ||||| || || || || ||||| | | || ||| || |||| | Sbjct 403128 GAAAAAGATCCCTTCCACAGCTGCGAAAGCAACCACACGTTCCCCAAAAGTGGCTCGCAG 403069 Query 50130 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 50189 ||| |||||| | | ||||| || |||||||| ||||||||||| | || || || Sbjct 403068 GTCTCCAATCCACCTGAGGGCCCACTCAGCCTTCTTCTTTACACAAGGTGTGGTCTCGAT 403009 Query 50190 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACT 50249 |||||||| |||| ||||| |||| ||| | || || || |||||||| ||||| Sbjct 403008 TGCATTAAACAGATGCTTTTTCTCATGCGGATCCTCAATGTAGGTGTCGATCAAGAGACT 402949 Query 50250 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 50309 |||||||| ||||| ||||| |||||||| ||||| || || ||||| || || ||||| Sbjct 402948 GTACATTTCAGAATGGATGTTCTCAATGGCAATCTGGAAGCCATAGAAGCACCTGGCCTC 402889 Query 50310 GGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACT 50369 ||| | ||||| ||| | | |||| || | | ||| ||| | || || || ||||| Sbjct 402888 GGTCAATTGCACCTCTTTGTAGAATCTCTCTACCAGATTCTCACTGACGATACCATCACT 402829 Query 50370 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATT 50429 |||||||| || ||||| | | || || || |||||||||||| || || | | Sbjct 402828 AGCTGCAAAGAATGCCAAAATGTACTTGATGAAGTGTTTTTCGTTGTCAGTGAGACTCCT 402769 Query 50430 CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGC 50489 ||||| | | || ||| ||| |||||||| ||| |||||| ||||| ||| | || Sbjct 402768 CCAATGGTCCAAGTCCTTACCTATGTCTACTTCCTCCGTTGTCCAGAATGACGCCACGGC 402709 Query 50490 CTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATT 50546 ||| || ||||| ||||||||| || | || || || || || || || | ||| Sbjct 402708 CTTCTTGTACATGAACCAGATGTCGTGGTTCTGTATAGGAAAGATGACGAAGCGATT 402652 >seq1648 Length=77580 Score = 154 bits (170), Expect = 2e-32 Identities = 428/654 (65%), Gaps = 3/654 (0%) Strand=Plus/Plus Query 49668 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 49727 ||| ||||| ||| |||| | || || ||||| || | || || | | || ||||| Sbjct 8018 TTTCTGGTACTCAGCCACCCTCTTCTCAAAAAAGTTTGCCTTCCCCTGGAGGGAGATATT 8077 Query 49728 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 49787 |||||| || |||||||| || || ||||| || | | | | || | | Sbjct 8078 TTCCATAAAGTCAAACGGGTTTTCCACGGAATAAACCTTCGGACAGCTGAGCTCTGCCAG 8137 Query 49788 CAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 49847 || | || || ||||| || || || |||||||||| | | ||||| || || | Sbjct 8138 CAGCCGGTCTGCTACAAACTCAATGTAGGTTTTCATCAGCTGTGAGTTCATCCCGATCAT 8197 Query 49848 TTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 49907 | || | | ||| | ||||| || || || || || || || | || | || Sbjct 8198 GTCCACCGACATGGCCTCCGTAAGGAACTCCTGCTCGATACTGACGGCCTGGGTGACGAT 8257 Query 49908 AGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAA 49967 | | || | || || || || || | || |||||||||| || || ||||| Sbjct 8258 CTGTGTCACTCTGTCCGGGCTGGGCGGGTGGATCAAGTGTTTAAACAACAGGCAGGCGAA 8317 Query 49968 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCAT 50027 || ||||||| |||||||| | |||||||||||| || || || || || || ||||| Sbjct 8318 CTCACAGTGCAAGCCCTCGTCACGACTAATTAGTTCATTTGAGAAGGTCAGGCCTGGCAT 8377 Query 50028 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTC 50087 || || || || || ||||| || |||| ||||||||||| || ||||||| ||| || Sbjct 8378 CAGCCCGCGTTTCTTTAGCCAGAAAATGGCAGCAAATGACCCTGAGAAGAAGACTCCCTC 8437 Query 50088 TACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG-CTGTCATG--TATCCACTT 50144 || || || ||||| || || | ||| || | |||| | || | || ||||||| Sbjct 8438 CACGGCAGCGAAGGCGACCAGCCGCTCCCCGAAGCTGGTGTCTTTACTGGCGATCCACTG 8497 Query 50145 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 50204 | ||||| || |||||| | ||||| || | || || | || || || Sbjct 8498 CAGCGCCCAGTCCGCCTTCCTGCGCACACAGGGGAGGGTCTCCACTGCCCGGAACAGCCG 8557 Query 50205 GtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATG 50264 | | | || || | || || || |||| || || ||||| ||||| || Sbjct 8558 CTGTCTCTCCCCCGGGTCCCGGATGTACGTGTCAATCAGCAGGCTGTACATCTCCGAGTG 8617 Query 50265 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 50318 | ||| || ||||| ||||| || || |||||||| | |||||| | || ||| Sbjct 8618 GACGTTCTCCATGGCGATCTGGAACCCATAGAAACACCGAGCCTCCGGAACCTG 8671 >seq1787 Length=2284422 Score = 98.7 bits (108), Expect = 1e-15 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 ||||||| || || || || |||||||||||||||||||| || || || |||||||| Sbjct 1959411 AACATCAGGCAGGCAAAGTCACAGTGCAGACCCTCGTCTCTGCTGATCAGCTCGTTGGAG 1959470 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070 ||||| || || ||||| || || | ||| || ||||| || || | ||||| || || Sbjct 1959471 AACGTCAGCCCAGGCATCAGACCTCTCTTCTTCAGCCAGAAAATAGCAGCAAAGGAACCT 1959530 Query 50071 GAAAAGA 50077 |||| || Sbjct 1959531 GAAATGA 1959537 Score = 87.8 bits (96), Expect = 3e-12 Identities = 103/139 (74%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 50068 CCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG 50127 || || ||||||||||| ||||| || || |||||||| | | ||| || || |||| Sbjct 1959821 CCTGAGAAGAAGATTCCCTCTACAGCAGCGAAGGCAACCACACGCTCCCCGAAAGTGGCT 1959880 Query 50128 C---TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 50184 |||| |||||| | | ||||| || |||||||| || ||||| |||| || Sbjct 1959881 TCCTTGTCCCCGATCCACCTGAGTGCCCAGTCAGCCTTCTTCTTCACACAGGGCAGGGTC 1959940 Query 50185 TCTATGGCATTAAAGAGAT 50203 ||||||||||| ||||||| Sbjct 1959941 TCTATGGCATTGAAGAGAT 1959959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718248077945120