Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1531 224 1e-53 seq1648 118 1e-21 >seq1531 Length=8964412 Score = 224 bits (248), Expect = 1e-53 Identities = 592/890 (67%), Gaps = 18/890 (2%) Strand=Plus/Minus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || ||||| || || || || | || | || ||||||||||| | || || Sbjct 403547 GACATCACCCCCATCTTCTGGTACTCTCCCACCTTCTTCTCAAAGAAGTTGCTCTTGCCC 403488 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT--ATTGACATAAACACTTTAT-CA 13682 ||||| || || || ||||| || ||||| || ||| | || |||| ||| | || Sbjct 403487 TCCAGGGAGATGTTCTCCATGAAGTCAAAGGGGTTTTCAGTGTTGTAAAT-CTTGCTGCA 403429 Query 13683 CAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCA 13742 || | ||| || | |||||||| || | |||||||||||| || ||| | || Sbjct 403428 CATCA-AGT-CTCCCAACAATCTATCTGCTACAAACTCAATATACTGTTTCATCAGGTCT 403371 Query 13743 CAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGAC 13802 |||||| || || || || || |||| | || ||||| |||| || || Sbjct 403370 TGATTCATCCCAATCAGCTTCACGGGAAGGGCGTCTGTCAAAAACTCTTGCTCAATCTTG 403311 Query 13803 ACAGCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTT--AGATGTT 13860 || || | |||||| | || | |||| | | | | | || || || Sbjct 403310 ACGGCACTGTCTATAATC-TGGTGAATATCTGCCTCGCTTG-GCCTGTTAACCAGGTGGC 403253 Query 13861 TAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTG 13920 |||| || | ||| ||||| ||| || | ||||||||||| || || || ||||| | Sbjct 403252 TAAACATCAGACAGGCAAACTCAGTGTGCATCCCCTCATCTCTGCTGATCAGCTCGTTGG 403193 Query 13921 AAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACC 13980 | || || | |||||||||||||||| || || ||||| ||||| || ||||| |||| Sbjct 403192 AGAAAGTCAGCCCTGGCATCAATCCTCTCTTCTTCAACCAGAATATAGCTGCAAAGGACC 403133 Query 13981 CGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTT 14040 | || || || || || || || || || || || | | ||||| ||||| | ||| Sbjct 403132 CAGAGAAAAAGATCCCTTCCACAGCTGCGAAAGCAACCACACGTTCCCCAAAAGTGGCTC 403073 Query 14041 TTTTGT-TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTT 14099 || || | ||||| | ||||| |||| || || || | | || | || Sbjct 403072 GCAGGTCTCCA-ATCCACCTGAGGGCCCACTCAGCCTTCTTCTTTACACAAGGTGTGGTC 403014 Query 14100 TCAATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGT 14159 || || |||||||| | || | ||||| | | | |||||| || || || | Sbjct 403013 TCGATTGCATTAAACAGATGCTTTTTCTCATGCGGATCCTCAATGTAGGTGTCGATCAAG 402954 Query 14160 AAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTA 14219 | || ||||||||||| || ||||| || || || ||||| || ||||| ||||| || Sbjct 402953 AGACTGTACATTTCAGAATGGATGTTCTCAATGGCAATCTGGAAGCCATAGAAGCACCTG 402894 Query 14220 GCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCA 14279 || || | | |||| || || ||| ||||| || ||| ||| ||| | || |||||| Sbjct 402893 GCCTCGGTCAATTGCACCTCTTTGTAGAATCTCTCTACCAGATTCTCACTGACGATACCA 402834 Query 14280 TCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGT---TG 14336 |||||||||||||| |||||||| |||| || || ||| || | ||| |||| || Sbjct 402833 TCACTAGCTGCAAAGAATGCCAAAATGTACTTGATGAAG---TGTTTTTCGTTGTCAGTG 402777 Query 14337 AGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTA 14396 || | |||||| | || |||||| | |||||||| || |||||| || Sbjct 402776 AGACTCCTCCAATGGTCCAAGTCCTTACCTATGTCTACTTCCTCCGTTGTCCAGAATGAC 402717 Query 14397 GCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAA 14446 || || || || || ||||| | ||| || || | | ||||||||| Sbjct 402716 GCCACGGCCTTCTTGTACATGAACCAGATGTCGTGGTTCTGTATAGGAAA 402667 >seq1648 Length=77580 Score = 118 bits (130), Expect = 1e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 13857 TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCG 13916 |||||||| | | || || || ||||| || | |||||| || | |||||| ||||| Sbjct 8295 TGTTTAAACAACAGGCAGGCGAACTCACAGTGCAAGCCCTCGTCACGACTAATTAGTTCA 8354 Query 13917 TTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAAT 13976 ||||| || || | |||||||||| || ||||| |||| ||| || || ||||||||| Sbjct 8355 TTTGAGAAGGTCAGGCCTGGCATCAGCCCGCGTTTCTTTAGCCAGAAAATGGCAGCAAAT 8414 Query 13977 GACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 14014 ||||| || ||||| | |||||| || ||||| || || Sbjct 8415 GACCCTGAGAAGAAGACTCCCTCCACGGCAGCGAAGGC 8452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479714159847200