Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1531 223 3e-53 >seq1531 Length=8964412 Score = 223 bits (246), Expect = 3e-53 Identities = 591/892 (66%), Gaps = 22/892 (2%) Strand=Plus/Minus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || ||||| || || || || | || | || ||||| ||||| | || || Sbjct 403547 GACATCACCCCCATCTTCTGGTACTCTCCCACCTTCTTCTCAAAGAAGTTGCTCTTGCCC 403488 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTT-----GTTGACATAAACACTTTAT 13468 ||||| || || || ||||| || || || || ||| |||| |||| ||| | Sbjct 403487 TCCAGGGAGATGTTCTCCATGAAGTCAAAGGGGTTTTCAGTGTTG---TAAAT-CTTGCT 403432 Query 13469 -CACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAA 13527 |||| | ||| || || |||||||| || | |||||||||||| || ||| | Sbjct 403431 GCACATCA-AGT-CTCCCAACAATCTATCTGCTACAAACTCAATATACTGTTTCATCAGG 403374 Query 13528 TCACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATA 13587 || |||||| || || || || || |||| | || ||||| |||| || || Sbjct 403373 TCTTGATTCATCCCAATCAGCTTCACGGGAAGGGCGTCTGTCAAAAACTCTTGCTCAATC 403314 Query 13588 GACACAGCCTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTT--AGAT 13645 || || || |||||| | |||| | | | | | | | || || | Sbjct 403313 TTGACGGCACTGTCTATAATCTGGTGAATA-TCTGCCTCGCTTG-GCCTGTTAACCAGGT 403256 Query 13646 GTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGT 13705 | |||| || | ||| ||||| ||| || | ||||||||||| || || || |||| Sbjct 403255 GGCTAAACATCAGACAGGCAAACTCAGTGTGCATCCCCTCATCTCTGCTGATCAGCTCGT 403196 Query 13706 TTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATG 13765 | || || || | |||||||||||||||| || || ||||| ||||| || || || | Sbjct 403195 TGGAGAAAGTCAGCCCTGGCATCAATCCTCTCTTCTTCAACCAGAATATAGCTGCAAAGG 403136 Query 13766 ATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATG 13825 | || || || || || || || || || || || || | | ||||| ||||| | | Sbjct 403135 ACCCAGAGAAAAAGATCCCTTCCACAGCTGCGAAAGCAACCACACGTTCCCCAAAAGTGG 403076 Query 13826 CTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTG 13885 || || | ||||| | ||||| |||| || || || | | || | | Sbjct 403075 CTCGCAGGTCTCCAATCCACCTGAGGGCCCACTCAGCCTTCTTCTTTACACAAGGTGTGG 403016 Query 13886 TTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAA 13945 | ||||||||||| || | ||| | ||||| | | | |||||| || || || | Sbjct 403015 TCTCGATTGCATTAAACAGATGCTTTTTCTCATGCGGATCCTCAATGTAGGTGTCGATCA 402956 Query 13946 GTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATC 14005 | || ||||||||||| || ||||| || || || ||||| || ||||| || || | Sbjct 402955 AGAGACTGTACATTTCAGAATGGATGTTCTCAATGGCAATCTGGAAGCCATAGAAGCACC 402896 Query 14006 TAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATAC 14065 | || || | | |||| ||||| ||| ||||| ||| ||| || ||| | || |||| Sbjct 402895 TGGCCTCGGTCAATTGCACCTCTTTGTAGAATCTCTCTACCAGATTCTCACTGACGATAC 402836 Query 14066 CATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGT--- 14122 |||||||||||||||| |||||||| |||| || || ||| || | ||| |||| Sbjct 402835 CATCACTAGCTGCAAAGAATGCCAAAATGTACTTGATGAAG---TGTTTTTCGTTGTCAG 402779 Query 14123 TGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAAC 14182 |||| | |||||| | | || |||||| | |||||||| || |||||| || Sbjct 402778 TGAGACTCCTCCAATGGTCCAAGTCCTTACCTATGTCTACTTCCTCCGTTGTCCAGAATG 402719 Query 14183 TAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAA 14234 || || || || || ||||| | ||| || || | | ||||||||| Sbjct 402718 ACGCCACGGCCTTCTTGTACATGAACCAGATGTCGTGGTTCTGTATAGGAAA 402667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478574992713120