Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1456 93.3 3e-14 seq1001 84.2 2e-11 seq317 82.4 6e-11 >seq1456 Length=293654 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||||||||| | | ||| || |||| |||||||||||| || | ||||| ||||| Sbjct 119419 GCCTCCACGCAGACGGAGCAC-AAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGA 119361 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| || || | || |||| || ||||||||||| || | ||||| || || | || Sbjct 119360 CAAGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGG 119301 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || || || || |||| | ||||| | | | |||||| | |||||| Sbjct 119300 GATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATAGTGTCGGATGGCTCGAC 119241 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || || || || ||||| || || || ||||| Sbjct 119240 TTCAAGGGTGATGGTCTTGCCTGTGAGGGTTTTGACGAAGATCTGCAT 119193 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | |||||| |||| ||||||||||| || | ||||| |||||| Sbjct 120558 CCACCACGCAGACGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAC 120499 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || ||||| ||||||||||| || || | |||||||| || | || Sbjct 120498 AGGGTGCGGCCATCTTCCAACTGTTTGCCGGCGAAGATGAGACGCTGTTGGTCTGGTGGG 120439 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || |||| | ||||| | | | ||||| | ||| || Sbjct 120438 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCTGATGGCTCAACC 120379 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || || || || ||||| || || || ||||| Sbjct 120378 TCGAGGGTGATGGTCTTGCCTGTCAGGGTTTTGACGAAGATCTGCAT 120332 >seq1001 Length=3733086 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/233 (68%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | |||||| |||| ||||||||||| || | ||||| |||||| Sbjct 1254407 CCACCACGCAGACGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAC 1254348 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || |||| || ||||||||||| || | ||||| || || | || Sbjct 1254347 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCTGGGGGG 1254288 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || |||| | ||||| | | | |||||| | ||| || Sbjct 1254287 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGATGGCTCAACC 1254228 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT-TTTCT 43114 || | || || || || || || || || ||||| || || ||||| ||||| Sbjct 1254227 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATATTTCT 1254175 >seq317 Length=4125 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| |||||||| | | ||||| |||| ||||||||||| || | ||||| ||||| Sbjct 1456 GCCACCACGCAGACGCAGGACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGA 1397 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || || || | || || | || ||||||||||| || | |||||||| || | ||| Sbjct 1396 CAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGCGG 1337 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || || || || |||| | ||||| | | | ||||| | |||||| Sbjct 1336 GATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCTGATGGCTCGAC 1277 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || || || || || ||||| || || ||||| Sbjct 1276 TTCCAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACGAAGATCTGCAT 1229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381358872549864