Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1531 315 1e-80 seq1787 95.1 2e-14 >seq1531 Length=8964412 Score = 315 bits (348), Expect = 1e-80 Identities = 612/898 (68%), Gaps = 7/898 (1%) Strand=Plus/Minus Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818 ||||| || ||||| || ||||| || ||||| || || || || || |||| || Sbjct 403547 GACATCACCCCCATCTTCTGGTACTCTCCCACCTTCTTCTCAAAGAAGTTGCTCTTGCCC 403488 Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 41878 |||| || || || |||||||| ||||| || || | || ||||| || | | Sbjct 403487 TCCAGGGAGATGTTCTCCATGAAGTCAAAGGGGTTTTCAGTGTTGTAAATCTTGCTGCAC 403428 Query 41879 CCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAA 41938 ||| || | |||||||||||| | || || ||||| |||||||| || | Sbjct 403427 ATCAAGTCTCCCAACAATCTATCTGCTACAAACTCAATATACTGTTTCATCAGGTCTTGA 403368 Query 41939 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 41998 ||||| || || || || || ||||| || | || | ||| ||||| ||||| ||| Sbjct 403367 TTCATCCCAATCAGCTTCACGGGAAGGGCGTCTGTCAAAAACTCTTGCTCAATCTTGACG 403308 Query 41999 GCGTCTGT-TATAATAGATCTTACTGTTT-CTTCACTCGGTGGATACAATAAATGTTTAA 42056 || |||| |||||| | | | | | | || || || | | | || ||| Sbjct 403307 GCA-CTGTCTATAATCTGG-TGAATATCTGCCTCGCTTGGCCTGTTAACCAGGTGGCTAA 403250 Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 |||||| ||| || || || ||||| ||||||||||| || || | |||||||| | Sbjct 403249 ACATCAGACAGGCAAACTCAGTGTGCATCCCCTCATCTCTGCTGATCAGCTCGTTGGAGA 403190 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAG 42176 | || || || ||||| | || | ||| || | ||| ||||||| ||||| || |||| Sbjct 403189 AAGTCAGCCCTGGCATCAATCCTCTCTTCTTCAACCAGAATATAGCTGCAAAGGACCCAG 403130 Query 42177 AAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT-- 42234 | || ||||| ||||| || || || || |||| | | || ||| || ||| | Sbjct 403129 AGAAAAAGATCCCTTCCACAGCTGCGAAAGCAACCACACGTTCCCCAAAAGTGGCTCGCA 403070 Query 42235 -GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 42293 ||| |||||| | | ||||| || |||||||| ||||||||||| | || || | Sbjct 403069 GGTCTCCAATCCACCTGAGGGCCCACTCAGCCTTCTTCTTTACACAAGGTGTGGTCTCGA 403010 Query 42294 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGAC 42353 | |||||||| |||| ||||| |||| ||| | || || || |||||||| |||| Sbjct 403009 TTGCATTAAACAGATGCTTTTTCTCATGCGGATCCTCAATGTAGGTGTCGATCAAGAGAC 402950 Query 42354 TATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCT 42413 | |||||||| ||||| ||||| |||||||| ||||| || || ||||| || ||||||| Sbjct 402949 TGTACATTTCAGAATGGATGTTCTCAATGGCAATCTGGAAGCCATAGAAGCACCTGGCCT 402890 Query 42414 CGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCAC 42473 |||| | || || ||| | | |||| || | | ||| || | || || || |||| Sbjct 402889 CGGTCAATTGCACCTCTTTGTAGAATCTCTCTACCAGATTCTCACTGACGATACCATCAC 402830 Query 42474 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTAT 42533 | |||||||| || ||||| | | || || || | |||||||| || | | Sbjct 402829 TAGCTGCAAAGAATGCCAAAATGTACTTGATGAAGTGTTTTTCGTTGTCAGTGAGACTCC 402770 Query 42534 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTG 42593 |||||| | | || ||| ||| |||||||| || ||||| ||||| || | | Sbjct 402769 TCCAATGGTCCAAGTCCTTACCTATGTCTACTTCCTCCGTTGTCCAGAATGACGCCACGG 402710 Query 42594 CCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATT 42651 |||| || ||||| |||||| || || | || || || || || || || | ||| Sbjct 402709 CCTTCTTGTACATGAACCAGATGTCGTGGTTCTGTATAGGAAAGATGACGAAGCGATT 402652 >seq1787 Length=2284422 Score = 95.1 bits (104), Expect = 2e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 ||||||| || || || || |||||||||||||| ||||| || || | |||||||| Sbjct 1959411 AACATCAGGCAGGCAAAGTCACAGTGCAGACCCTCGTCTCTGCTGATCAGCTCGTTGGAG 1959470 Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175 ||||| || || ||||| || || | ||| || ||||| || |||| ||||| || || Sbjct 1959471 AACGTCAGCCCAGGCATCAGACCTCTCTTCTTCAGCCAGAAAATAGCAGCAAAGGAACCT 1959530 Query 42176 GAAAAGA 42182 |||| || Sbjct 1959531 GAAATGA 1959537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671119837634080