Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1531 210 3e-49 >seq1531 Length=8964412 Score = 210 bits (232), Expect = 3e-49 Identities = 573/864 (66%), Gaps = 24/864 (3%) Strand=Plus/Plus Query 125013 CATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTC 125072 || ||||| ||| |||||||| ||||| ||| || || ||||| || || || Sbjct 402682 CACGACATCTGGTTCATGTACAAGAAGGCCGTGGCGTCATTCTGGACAACGGAGGAAGTA 402741 Query 125073 GATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTT 125132 || | |||||| || || ||||| || || | ||||| | || | | || Sbjct 402742 GACATAGGTAAGGACTTGGACCATTGGAGGAGTC---TCACTGACAACGAAAAACACTTC 402798 Query 125133 ATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTT- 125191 || | |||||||||| |||||||| | ||||| ||||||| || |||||| | Sbjct 402799 ATCAAGTACATTTTGGCATTCTTTGCAGCTAGTGATGGTATCGTCAGTGAGAATCTGGTA 402858 Query 125192 GACACGATTCTCTCAAGAGTTGACCATTC-CAGAGGTGTCGTGCTTTTACGGATTCCAAA 125250 || | |||||| ||||| || | ||| | |||| |||||| || || ||||| | Sbjct 402859 GAGA-GATTCTACAAAGAGGTG-CAATTGACCGAGGCCAGGTGCTTCTATGGCTTCCAGA 402916 Query 125251 TCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCG 125310 | ||||||||| | || || ||||||||| | |||| |||| |||||| | Sbjct 402917 TTGCCATTGAGAACATCCATTCTGAAATGTACAGTCTCTTGATCGACACCTACATTGAGG 402976 Query 125311 ATCCGCAACGTAAACA-CATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAA 125369 ||||||| ||| | ||| || ||||| |||||||| || || | | || || Sbjct 402977 ATCCGCATGAGAAAAAGCAT-CTGTTTAATGCAATCGAGACCACACCTTGTGTAAAGAAG 403035 Query 125370 AAGGCTCAATGGGTGATTCGGTGGATCGATGACGA-CAAGTCTTCGTACGCCGACAGACT 125428 |||||| | |||| | ||||||| | ||| | || | | | | || | | Sbjct 403036 AAGGCTGAGTGGGCCCTCAGGTGGATTGGAGACCTGCGAGCCA-CTTTTGGGGAACGTGT 403094 Query 125429 GGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTG 125488 ||| || ||||| || || || || ||||| || || || ||||| || || || || Sbjct 403095 GGTTGCTTTCGCAGCTGTGGAAGGGATCTTTTTCTCTGGGTCCTTTGCAGCTATATTCTG 403154 Query 125489 GCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGA 125548 | | |||||| | ||| | ||||| || ||||| | |||||| | || |||| Sbjct 403155 GTTGAAGAAGAGAGGATTGATGCCAGGGCTGACTTTCTCCAACGAGCTGATCAGCAGAGA 403214 Query 125549 CGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTG 125608 ||||| | ||| ||| |||||| ||| ||||| || || ||| | | Sbjct 403215 TGAGGGGATGCACACTGAGTTTGCCTGTCTGATGTTTAGCCAC---CTGGTTAAC----- 403266 Query 125609 CAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGA 125668 || | ||||| | | | | | | ||| || | |||||| | ||| || ||||| Sbjct 403267 -AGGCCAAGCGAGGCAGATATTCACCAGATTATAGACAGTGCCGTCAAGATTGAGCAAGA 403325 Query 125669 GTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAG--CTAATGTGC 125726 |||| | || || |||| || || | ||||||| ||||| |||| || ||| Sbjct 403326 GTTTTTGACAGACGCCCTTCCCGTGAAGCTGATTGGGATGAAT--CAAGACCTGATGAAA 403383 Query 125727 GAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTAC 125786 |||| || |||||||| |||||| | | || || ||||| || ||||||||||| Sbjct 403384 CAGTATATTGAGTTTGTAGCAGATAGATTGTTGGGAGACTTGATGTGCAGCAAGATTTAC 403443 Query 125787 AACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTT 125846 ||| | | || |||||||| |||||| | ||| || || ||||| |||| |||||| Sbjct 403444 AACACTGAAAACCCCTTTGACTTCATGGAGAACATCTCCCTGGAGGGCAAGAGCAACTTC 403503 Query 125847 TTCGAGAAGAAGGTCAGCGAGTAC 125870 || ||||||||||| | |||||| Sbjct 403504 TTTGAGAAGAAGGTGGGAGAGTAC 403527 Score = 100 bits (110), Expect = 4e-16 Identities = 328/508 (65%), Gaps = 4/508 (1%) Strand=Plus/Plus Query 70064 GAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTA 70123 ||||| || ||||| || | || || ||||| |||||||||| || | | ||| Sbjct 377056 GAGGGAGACCTGGGCCCCATCTATGGCTTCCAATGGAGGCACTTTGGAGCGGAATATAAG 377115 Query 70124 GACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAA--TCATTGACA 70181 || | || ||||| |||| || ||||| || || | || | | |||| ||| Sbjct 377116 GATAAAAACACTGACTACACGGGACAAGGTGTGGACCAGCT--AGCCCAGGTCATCCACA 377173 Query 70182 CTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATT 70241 | |||||| | || || |||||||| | || | | | ||||| || |||| Sbjct 377174 CCATCAAGAATGACCCTCATGACAGGAGGATAATCATATCCGCGTGGAACCCACCAGACG 377233 Query 70242 TGCACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGATGGCA 70301 ||| | | ||||| || || || || ||| || | ||||||||| | || ||| Sbjct 377234 TGCCCAATATGGCGCTGCCTCCCTGCCACACCTTTGTGCAGTTTTACGTTTGTGACGGCG 377293 Query 70302 AATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACA 70361 | | || || |||| ||| | | ||||| |||||||| || || || |||| Sbjct 377294 AGCTCTCGTGTCAGCTGTACCAGCGCTCCGGAGACATTGGCCTCGGCGTTCCGTTCAACA 377353 Query 70362 TTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACG 70421 | || ||||| | | |||| | ||||| || ||||| || || || || | | Sbjct 377354 TCGCCAGCTACAGTCTCCTGACCTATATGATAGCCCACATCACAGGACTAAAGCCTGGGG 377413 Query 70422 AGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGG 70481 | || ||||||||| | || ||||| || |||||| | ||||| ||||| | | || | Sbjct 377414 ACTTTGTACACACCCTGGGAGACGCGCATGTGTATCTCAATCATATCGACGCTCTTAACG 377473 Query 70482 TGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAAGTTGAAA 70541 ||| | | | | || |||||||||||| || | | || ||||| |||| Sbjct 377474 AGCAGGTAAAGAGAAATCCACGACCTTTTCCCATCCTCAACATCAAACGCAAAGTGGAAA 377533 Query 70542 ATATTGACAGTTTTAAGTACGAAGATTT 70569 | ||||| || | || ||| ||||| Sbjct 377534 ACATTGATGACTTCAGGTTCGAGGATTT 377561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741037820442080