Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1648 104 2e-17 seq1787 98.7 9e-16 >seq1648 Length=77580 Score = 104 bits (114), Expect = 2e-17 Identities = 303/464 (65%), Gaps = 2/464 (0%) Strand=Plus/Plus Query 12875 ACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCATAAAATCGAAA 12934 || || || ||||||||||||| || || | | || |||||||||||||| || || Sbjct 8034 ACCCTCTTCTCAAAAAAGTTTGCCTTCCCCTGGAGGGAGATATTTTCCATAAAGTCAAAC 8093 Query 12935 GGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAACAATCTGTCAGCAACA 12994 || |||| | |||| || ||| | | ||| | || | ||| || ||| Sbjct 8094 GGGTTTTCCACGGAATAAACCTTCGGACAGCTGAGCTCTGCCAGCAGCCGGTCTGCTACA 8153 Query 12995 AACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACAGGCATAGCT 13054 ||||| ||||| |||||| | | ||||||| || || | | || | ||| || Sbjct 8154 AACTCAATGTAGGTTTTCATCAGCTGTGAGTTCATCCCGATCATGTCCACCGACATGGCC 8213 Query 13055 TCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTCTCTTATTACGTTC 13114 || || | || | | || ||| || || | | | || || | | | | | || | Sbjct 8214 TCCGTAAGGAACTCCTGCTCGATACTGACGGCCTGGGTGACGATCTGTGTCACTCTGTCC 8273 Query 13115 TCTAATGGAGGATTTGATAGA-TGCTTAAACATCATACATGCAAAATCACAGTGCAATCC 13173 || || | ||| | || ||||||| || || || || ||||||||||| || Sbjct 8274 GGGCTGGGCGGGTG-GATCAAGTGTTTAAACAACAGGCAGGCGAACTCACAGTGCAAGCC 8332 Query 13174 TTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTT 13233 || || | ||| ||||| || ||||| || || || || ||||| ||||| ||||| || Sbjct 8333 CTCGTCACGACTAATTAGTTCATTTGAGAAGGTCAGGCCTGGCATCAGCCCGCGTTTCTT 8392 Query 13234 AATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGC 13293 | ||| || || |||||||| || || || || || | ||| || || || || || || Sbjct 8393 TAGCCAGAAAATGGCAGCAAATGACCCTGAGAAGAAGACTCCCTCCACGGCAGCGAAGGC 8452 Query 13294 TATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCACT 13337 | || || || || | | | | |||||| | ||||||| Sbjct 8453 GACCAGCCGCTCCCCGAAGCTGGTGTCTTTACTGGCGATCCACT 8496 >seq1787 Length=2284422 Score = 98.7 bits (108), Expect = 9e-16 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 13142 AACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAA 13201 ||||||| || ||||| |||||||||| || || ||||| || || |||||||| || Sbjct 1959411 AACATCAGGCAGGCAAAGTCACAGTGCAGACCCTCGTCTCTGCTGATCAGCTCGTTGGAG 1959470 Query 13202 AATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCC 13261 || || || || ||||| || |||| || || | ||| || ||||||||||| ||||| Sbjct 1959471 AACGTCAGCCCAGGCATCAGACCTCTCTTCTTCAGCCAGAAAATAGCAGCAAAGGAACCT 1959530 Query 13262 Gaaa 13265 |||| Sbjct 1959531 GAAA 1959534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430970277003816