Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1531 205 2e-47 seq1456 120 7e-22 >seq1531 Length=8964412 Score = 205 bits (226), Expect = 2e-47 Identities = 591/898 (66%), Gaps = 16/898 (2%) Strand=Plus/Plus Query 268703 TTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTTGCT 268762 || || || ||||| |||||| | || || ||| |||||||| ||||||| || Sbjct 402658 TTCGTCATCTTTCCTATACAGAACCACGACATCTGGTTCATGTACAAGAAGGCCGTGGCG 402717 Query 268763 TCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAATTTA 268822 || || ||||| || |||||||| | | | ||||| |||||| | | | Sbjct 402718 TCATTCTGGACAACGGAGGAAGTAGACATAGGTAAGGACTTGGACCATTGGAGGAGTCTC 402777 Query 268823 AAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGT 268882 | | |||| | || || || ||| | || || ||||||| |||||||||| Sbjct 402778 ACTGACAACGAAAAACACTTCATCAAGTACATTTTGGCATTCTTTGCAGCTAGTGATGGT 402837 Query 268883 ATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGA 268942 ||||| | || ||||| ||||||| |||| ||||||| || | | || ||||| Sbjct 402838 ATCGTCAGTGAGAATCTGGTAGAGAGATTCTACAAAGAGGTGCAATTGACCGAGGCCAGG 402897 Query 268943 TGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTA 269002 || || || || |||||||| || || || || || ||||| || ||||||||||| || Sbjct 402898 TGCTTCTATGGCTTCCAGATTGCCATTGAGAACATCCATTCTGAAATGTACAGTCTCTTG 402957 Query 269003 ATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCTAT-GAGAAC 269061 || || || || || || ||| | || || || || ||| | | || ||| || Sbjct 402958 ATCGACACCTACATTGAGGATCCGCATGAGAAAAAGCATCTGTTTAATGCAATCGAG-AC 403016 Query 269062 TATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGAT---AAACGATAGCGC 269118 | ||||| | || || |||| ||||| || | ||||| | || | || Sbjct 403017 CACACCTTGTGTAAAGAAGAAGGCTGAGTGGGCCCTCAGGTGGATTGGAGACCTGCGAGC 403076 Query 269119 GCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTC 269178 ||| || ||| | | |||||||| || ||||| ||||| || || || || ||||| Sbjct 403077 CACTTTTGGGGAACGTGTGGTTGCTTTCGCAGCTGTGGAAGGGATCTTTTTCTCTGGGTC 403136 Query 269179 TTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAA 269238 ||||| ||||| || ||||||||||| ||||| | |||||||| | |||||||| || Sbjct 403137 CTTTGCAGCTATATTCTGGTTGAAGAAGAGAGGATTGATGCCAGGGCTGACTTTCTCCAA 403196 Query 269239 CGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTATTTA-CTA 269297 ||| |||| ||||| || || || | ||| || || || ||| | | |||| | | Sbjct 403197 CGAGCTGATCAGCAGAGATGAGGGGATGCACACTGAGTTTGCCTGTCTGATGTTTAGCCA 403256 Query 269298 ATTATCTTTCACACAAACCTTCTCAAGATAGAGTATACGAAATTATAGATTCAGCTGTTT 269357 | | || | || | | ||||| | || | |||||||| || || Sbjct 403257 CCTGGTTAACAGGCCAAGCGAGGC-AGATA---TTCACCAGATTATAGACAGTGCCGTCA 403312 Query 269358 CTGTAGAAACAGAATTTCTAACGGAAGCTCTATCTATCGATCTTATCGGTATGAATAGCA 269417 | || ||| ||| | || || || || | | | || || || |||||| || Sbjct 403313 AGATTGAGCAAGAGTTTTTGACAGACGCCCTTCCCGTGAAGCTGATTGGGATGAAT--CA 403370 Query 269418 AATC--GATGATAGAATATATTAAGTTCGTATCTGATAGATTGCT-GGTGTCTTTAGGGT 269474 | | ||||| | | |||||| |||| ||| | ||||||||| | || | ||| | || Sbjct 403371 AGACCTGATGAAACAGTATATTGAGTTTGTAGCAGATAGATTGTTGGGAGACTTGA-TGT 403429 Query 269475 TTAGTAAAAAATATAACGTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAG 269534 || || | || ||| |||||| || ||| || |||||||| || || | || | Sbjct 403430 GCAGCAAGATTTACAACACTGAAAACCCCTTTGACTTCATGGAGAACATCTCCCTGGAGG 403489 Query 269535 GTAAGGCTAATTTCTTCGAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTC 269592 | ||| || ||||| |||||| ||| | | || ||||| ||||| || ||||| Sbjct 403490 GCAAGAGCAACTTCTTTGAGAAGAAGGTGGGAGAGTACCAGAAGATGGGGGTGATGTC 403547 >seq1456 Length=293654 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| || || |||||||| || || | || ||||| || || || |||||||| Sbjct 119610 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 119551 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | ||| || || || || || || || || || || ||||| || || |||||| Sbjct 119550 ATGAGACGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTT 119491 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | |||||| || || || ||||| || || ||||| || || || || || ||| Sbjct 119490 TCAATGGTATCTGACGGCTCCACTTCTAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACA 119431 Query 104549 AATATCTGCAT 104559 ||||||||||| Sbjct 119430 AATATCTGCAT 119420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151364351710064