Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq1531 105 6e-18 >seq1531 Length=8964412 Score = 105 bits (116), Expect = 6e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 5582 CGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCCG 5641 ||||| ||||||||||| ||||| ||||| || | || || | ||| || | | || Sbjct 381499 CGCTCACAGATCAGCTGGGCTATCCGGTCCCCTTTGTTCACTTTGAACTCTTCATTCCCA 381558 Query 5642 AAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCC 5701 |||||||||| | || | ||||||||| ||| | || ||| || || || || || Sbjct 381559 AAGTTGAACATGATGACACTCACGTTGCCACGGGAATCCCTGTCAATTACCCCGGCTCCG 381618 Query 5702 ACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCCACGCGGCCGTAGCACCCA 5761 || || ||||| | ||| ||||||||||| || || ||||| | ||| ||||| || Sbjct 381619 ACATCTATGAATTTTTTGTGTGCCAGGCCGGATCGAGGTGCCACTCTGCCATAGCAGCCT 381678 Query 5762 TCGGGAAG 5769 ||||| || Sbjct 381679 TCGGGTAG 381686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430042303107296