Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq1531 224 7e-54 seq1224 109 4e-19 >seq1531 Length=8964412 Score = 224 bits (248), Expect = 7e-54 Identities = 435/635 (69%), Gaps = 9/635 (1%) Strand=Plus/Minus Query 25331 GAAATCCTCTGCCTTAAAGTCGTCCAGGCTCTCCACCCTCCTGTTTATCCTCAGTGTGGG 25390 ||||||||| | | ||||| || | | | ||||| | | || || | || |||| Sbjct 377562 GAAATCCTCGAACCTGAAGTCATCAATGTTTTCCACTTTGCGTTTGATGTTGAGGATGGG 377503 Query 25391 AAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGAC 25450 ||| |||| || | |||| | ||| || || | || | |||| || || || Sbjct 377502 AAAAGGTCGTGGATTTCTCTTTACCTGCTCGTTAAGAGCGTCGATATGATTGAGATACAC 377443 Query 25451 GTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCAT 25510 || ||||||||||| ||||| ||||| || || || | ||| || || | || || || Sbjct 377442 ATGCGCGTCTCCCAGGGTGTGTACAAAGTCCCCAGGCTTTAGTCCTGTGATGTGGGCTAT 377383 Query 25511 CATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCC 25570 ||| || || |||||| ||||||||||||||| || || || |||| || |||| | | Sbjct 377382 CATATAGGTCAGGAGACTGTAGCTGGCGATGTTGAACGGAACGCCGAGGCCAATGT-CTC 377324 Query 25571 CCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTG-ACACATG 25629 | || | |||||| ||||||||||||||||| |||| | ||||||||||| ||| | | Sbjct 377323 CGGAGCGCTGGTACAGCTGACACGAGAGCTCGCCGTCACAAACGTAAAACTGCACA-AAG 377265 Query 25630 GTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGATG 25689 |||| ||| ||||| || || ||| | || |||| |||||||| ||| | | ||| Sbjct 377264 GTGTGGCAGGGAGGCAGCGCCATATTGGGCACGTCTGGTGGGTTCCACGCGGATATGATT 377205 Query 25690 ATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTG---CAGCTGATCC 25746 || | |||||| | |||| | | |||| | | | | || || ||||| ||| Sbjct 377204 ATCCTCCTGTCATGAGGGTCATTCTTGAT--GGTGTG-GATGACCTGGGCTAGCTGGTCC 377148 Query 25747 ACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCAC 25806 || || |||| |||||| | | | ||| | || || ||||| || | |||||| Sbjct 377147 ACACCTTGTCCCGTGTAGTCAGTGTTTTTATCCTTATATTCCGCTCCAAAGTGCCTCCAT 377088 Query 25807 TGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCC 25866 ||||| || || | || || |||||||| || || || | | || | | | ||| Sbjct 377087 TGGAAGCCATAGATGGGGCCCAGGTCTCCCTCCTCATAATGGTTCAGACCACGCCTGTCC 377028 Query 25867 AAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTG 25926 || || |||| ||||| || || ||||| || | ||| || || || || || ||| Sbjct 377027 AAGAATTCTCGCGAACCGTTCGCATCCCATATATGCACCTTTTTGTCAGAAAGTTCCTTG 376968 Query 25927 GAGTTTGTGGACCCTCTGACGAACCACAGCAGCTC 25961 | ||| || || || | |||||||| || ||||| Sbjct 376967 GCGTTCGTAGAGCCCCGAACGAACCAGAGGAGCTC 376933 >seq1224 Length=3633418 Score = 109 bits (120), Expect = 4e-19 Identities = 138/187 (74%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 25777 TCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCA 25836 ||| |||| ||||| || || | |||||||||||| |||||||| || || |||||||| Sbjct 3004530 TCCTTGTATTCTGCACCAAAGTGCCTCCACTGGAAGCCGTACACAGGGCCGAGGTCTCCC 3004471 Query 25837 TCTTCCCTGTG-CTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCA 25895 || || ||| |||| || | ||| |||| ||||| | || |||||||||||||| Sbjct 3004470 TCCTCATAGTGGCTCAGT-CCACGCTTGTCCAGGAAGTCACGTGAGCCATTGGCGTCCCA 3004412 Query 25896 GATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAG 25955 ||| | || || || || || ||| || ||||| || || ||||| ||||||| Sbjct 3004411 GATGTGCACGTTTTTGTCAGAAAGTTCTGTGCCATTTGTAGAGCCCCTGACAAACCACAA 3004352 Query 25956 CAGCTCC 25962 |||||| Sbjct 3004351 GAGCTCC 3004345 Score = 109 bits (120), Expect = 4e-19 Identities = 108/136 (79%), Gaps = 3/136 (2%) Strand=Plus/Minus Query 25509 ATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCC 25568 |||||||| ||||||||| |||||||||||||||| |||||||| |||| ||| ||| | Sbjct 3005351 ATCATGTAGGTGAGGAGAGAGTAGCTGGCGATGTTGAAGGGTACGCCGAGTCCCGTGT-C 3005293 Query 25569 CCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACT-GACACA 25627 ||||| | |||||| ||||||||||| || ||| ||| | || || |||| |||| | Sbjct 3005292 TCCCGAGCGCTGGTACAGCTGACACGACAGTTCTCCGTTACATACATAGAACTGGACA-A 3005234 Query 25628 TGGTGTAGCACGGAGG 25643 || || ||| || || Sbjct 3005233 AGGCGTGGCAGGGTGG 3005218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340128032354484