Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq713 93.3 2e-14 seq1446 91.5 8e-14 seq1543 87.8 9e-13 seq2009 86.0 3e-12 seq1665 84.2 1e-11 seq1125 82.4 4e-11 >seq713 Length=595023 Score = 93.3 bits (102), Expect = 2e-14 Identities = 58/63 (92%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 || ||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||| Sbjct 561286 GGGTCGAACCCACGACCTTCGCGTTATCAGCACGACGCTCTAACCAACTGAGCTAATGGG 561345 Query 11528 CCG 11530 ||| Sbjct 561346 CCG 561348 >seq1446 Length=3482675 Score = 91.5 bits (100), Expect = 8e-14 Identities = 89/112 (79%), Gaps = 5/112 (4%) Strand=Plus/Minus Query 11420 AATCCAGGGAAATATAGAATTAATAAAAAATCAAATTGGCC--CATGAAAGGATCGAACC 11477 || ||| ||||| || ||| || |||||| |||||||| || | || ||||||| Sbjct 1091900 AAACCAAGGAAAAAT-GAAAGAAAGAAAAATTGAATTGGCCAGCACGG--GGGTCGAACC 1091844 Query 11478 TTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| ||||||||||||| |||||||||||||| |||| Sbjct 1091843 CGCGACCTTCGCGTTATCAGCACGACGCTCTAACCAACTGAGCTAACCGGCC 1091792 >seq1543 Length=3076745 Score = 87.8 bits (96), Expect = 9e-13 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||||||||||||||||||||| |||||||||||||| || Sbjct 676241 GGATCGAACCCGCGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACCGG 676182 Query 11528 CC 11529 || Sbjct 676181 CC 676180 Score = 87.8 bits (96), Expect = 9e-13 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||||||||||||||||||||| |||||||||||||| || Sbjct 677511 GGATCGAACCCGCGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACCGG 677452 Query 11528 CC 11529 || Sbjct 677451 CC 677450 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 || ||||||| ||||||||||||||| ||||||||||||| |||||||||||||| || Sbjct 674773 GGGTCGAACCCGCGACCTTCGCGTTATCAGCACGACGCTCTAACCAACTGAGCTAACCGG 674832 Query 11528 CC 11529 || Sbjct 674833 CC 674834 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 || ||||||| ||||||||||||||| ||||||||||||| |||||||||||||| || Sbjct 681883 GGGTCGAACCCGCGACCTTCGCGTTATCAGCACGACGCTCTAACCAACTGAGCTAACCGG 681824 Query 11528 CC 11529 || Sbjct 681823 CC 681822 >seq2009 Length=1711188 Score = 86.0 bits (94), Expect = 3e-12 Identities = 65/75 (87%), Gaps = 2/75 (3%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 || ||||||| ||||||||||||||| ||||||||||||| |||||||||||||| || Sbjct 1072563 GGGTCGAACCCGCGACCTTCGCGTTATCAGCACGACGCTCTAACCAACTGAGCTAACCGG 1072504 Query 11528 CC-GTCGAC-GATTG 11540 || |||| | ||||| Sbjct 1072503 CCAGTCGTCTGATTG 1072489 >seq1665 Length=2752246 Score = 84.2 bits (92), Expect = 1e-11 Identities = 72/88 (82%), Gaps = 4/88 (5%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCC--CATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||||| | |||||| || | || ||||||| ||||||||||||||| |||||| Sbjct 2058044 AAAAAATAATGTTGGCCAGCACGG--GGGTCGAACCCGCGACCTTCGCGTTATCAGCACG 2057987 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||| |||| Sbjct 2057986 ACGCTCTAACCAACTGAGCTAACCGGCC 2057959 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 || ||||||| ||||||||||||||| ||||||||||||| |||||||||||||| || Sbjct 2048309 GGGTCGAACCCGCGACCTTCGCGTTATCAGCACGACGCTCTAACCAACTGAGCTAACCGG 2048368 Query 11528 CC 11529 || Sbjct 2048369 CC 2048370 >seq1125 Length=391675 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 || ||||||| ||||||||||||||| ||||||||||||| |||||||||||||| || Sbjct 361435 GGGTCGAACCCGCGACCTTCGCGTTATCAGCACGACGCTCTAACCAACTGAGCTAACCGG 361376 Query 11528 CC 11529 || Sbjct 361375 CC 361374 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261483844579408