Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq113 190 3e-44 seq1002 187 4e-43 seq2015 172 9e-39 seq1291 172 9e-39 seq213 129 9e-26 seq2 84.2 3e-12 >seq113 Length=5295706 Score = 190 bits (210), Expect = 3e-44 Identities = 190/244 (78%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | | || || || |||||||| || ||||||||||| |||| Sbjct 2689177 CGCCAAGCGTCACCGCA-AGGTGTTGCGTGACAACATCCAGGGCATCACCAAGCCCGCTA 2689235 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||||||||||||| || |||||||| ||||||||| |||| || | |||| || |||| Sbjct 2689236 TCCGTCGTCTGGCCCGCCGTGGTGGTGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGA 2689295 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| || | ||| |||||||| ||| ||| |||| |||||| || ||| |||| Sbjct 2689296 CCCGTGGCGTCCTCAAGGTCTTCCTCGAGAACGTCATCCGTGATGCCGTCACCTACACCG 2689355 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| |||||| ||||||| | ||||| || |||| || || | Sbjct 2689356 AGCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTTGTCTACGCTCTGAAGCGCCAGG 2689415 Query 16671 GCCG 16674 |||| Sbjct 2689416 GCCG 2689419 Score = 190 bits (210), Expect = 3e-44 Identities = 190/244 (78%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | | | || || ||||||||||| || ||||||||||| |||| Sbjct 2782640 CGCCAAGCGTCACCGGA-AGGTGTTGCGTGATAACATCCAGGGCATCACCAAGCCCGCTA 2782698 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||||||||||||| || |||||||| ||||||||| ||||||| | |||| || |||| Sbjct 2782699 TCCGTCGTCTGGCCCGCCGTGGTGGTGTCAAGCGTATCTCTGGTCTCATCTACGAGGAGA 2782758 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| || | ||| ||||||| ||| ||| |||| |||||| || ||| |||| Sbjct 2782759 CCCGTGGCGTCCTCAAGGTCTTCCTGGAGAACGTCATCCGTGATGCCGTCACCTACACCG 2782818 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| |||||| ||||||| | ||||| || |||| || || | Sbjct 2782819 AGCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTTGTCTACGCTCTGAAGCGCCAGG 2782878 Query 16671 GCCG 16674 |||| Sbjct 2782879 GCCG 2782882 Score = 181 bits (200), Expect = 2e-41 Identities = 188/244 (77%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | | | || || ||||||||||| || || |||||||| |||| Sbjct 2754803 CGCCAAGCGTCACCGTA-AGGTGTTGCGTGATAACATCCAGGGCATTACCAAGCCCGCTA 2754745 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||||||||||||| || |||||||| ||||||||| |||| || | |||| || |||| Sbjct 2754744 TCCGTCGTCTGGCCCGCCGTGGTGGTGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGA 2754685 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| || | ||| ||||||| ||| ||| |||| |||||| || ||| |||| Sbjct 2754684 CCCGTGGCGTCCTCAAGGTCTTCCTGGAGAACGTCATCCGTGATGCCGTCACCTACACCG 2754625 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| |||||| ||||||| | ||||| || |||| || || | Sbjct 2754624 AGCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTTGTCTACGCTCTGAAGCGCCAGG 2754565 Query 16671 GCCG 16674 |||| Sbjct 2754564 GCCG 2754561 Score = 181 bits (200), Expect = 2e-41 Identities = 188/244 (77%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | | | || || ||||||||||| || ||||||||||| |||| Sbjct 2995597 CGCGAAGCGTCACCGTA-AGGTGTTGCGTGATAACATCCAGGGCATCACCAAGCCCGCTA 2995655 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||||||||||||| || |||||||| ||||||||| |||| || | | || || |||| Sbjct 2995656 TCCGTCGTCTGGCCCGCCGTGGTGGTGTCAAGCGTATCTCCGGTCTCATATACGAGGAGA 2995715 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| ||| | ||| | ||||| ||| ||| |||| |||||| || ||| |||| Sbjct 2995716 CCCGTGGTGTCCTCAAGGTATTCCTGGAGAACGTCATCCGTGATGCCGTCACCTACACCG 2995775 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| |||||| ||||||| | ||||| || |||| || || | Sbjct 2995776 AGCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTTGTCTACGCTCTGAAGCGCCAGG 2995835 Query 16671 GCCG 16674 |||| Sbjct 2995836 GCCG 2995839 Score = 181 bits (200), Expect = 2e-41 Identities = 188/244 (77%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | | | || || ||||||||||| || ||||||||||| || | Sbjct 3182076 CGCCAAGCGTCACCGTA-AGGTGTTGCGTGATAACATCCAGGGCATCACCAAGCCCGCGA 3182134 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||||||||||||| || |||||||| ||||||||| |||| || | |||| || |||| Sbjct 3182135 TCCGTCGTCTGGCCCGCCGTGGTGGTGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGA 3182194 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| || | ||| ||||||| ||| ||| |||| |||||| || ||| |||| Sbjct 3182195 CCCGTGGCGTCCTCAAGGTCTTCCTGGAGAACGTCATCCGTGATGCCGTCACCTACACCG 3182254 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| |||||| ||||||| | ||||| || |||| || || | Sbjct 3182255 AGCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTTGTCTACGCTCTGAAGCGCCAGG 3182314 Query 16671 GCCG 16674 |||| Sbjct 3182315 GCCG 3182318 Score = 181 bits (200), Expect = 2e-41 Identities = 188/244 (77%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | | | || || ||||||||||| || ||||||||||| || | Sbjct 3328279 CGCCAAGCGTCACCGTA-AGGTGTTGCGTGATAACATCCAGGGCATCACCAAGCCCGCAA 3328221 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||||||||||||| || |||||||| ||||||||| |||| || | |||| || |||| Sbjct 3328220 TCCGTCGTCTGGCCCGCCGTGGTGGTGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGA 3328161 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| || | ||| ||||||| ||| ||| |||| |||||| || ||| |||| Sbjct 3328160 CCCGTGGCGTCCTCAAGGTCTTCCTGGAGAACGTCATCCGTGATGCCGTCACCTACACCG 3328101 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| |||||| ||||||| | ||||| || |||| || || | Sbjct 3328100 AGCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTTGTCTACGCTCTGAAGCGCCAGG 3328041 Query 16671 GCCG 16674 |||| Sbjct 3328040 GCCG 3328037 Score = 125 bits (138), Expect = 1e-24 Identities = 173/244 (71%), Gaps = 21/244 (9%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | | | || || ||||||||||| || ||| |||||| |||| Sbjct 3164841 CGCCAAGCGTCACCGTA-AGGTGTTGCGTGATAACATCCAGGGCATCCACAAGCCCGCTA 3164899 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||||||||||||| || |||||||| ||||||||| | || || | |||| || |||| Sbjct 3164900 TCCGTCGTCTGGCCCGCCGTGGTGGTGTCAAGCGTATTTCCGGTCTCATCTACGAGGAGA 3164959 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| || | ||| |||||| ||| || ||| |||| Sbjct 3164960 CCCGTGGCGTCCTCAAGGTCTTCC-------------------TGCCGTCACCTACACCG 3165000 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || |||||||||||| ||||||| | ||||| || |||| || || | Sbjct 3165001 AGCACGCCAAGCGCAAGACTGTCACCGCCATGGACGTTGTCTACGCTCTGAAGCGCCAGG 3165060 Query 16671 GCCG 16674 |||| Sbjct 3165061 GCCG 3165064 >seq1002 Length=435581 Score = 187 bits (206), Expect = 4e-43 Identities = 187/243 (77%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | |||||||| |||||||| || ||||||||||||||||| Sbjct 381291 CGCCAAGCGTCACCGTAAGGTGCTTCGAGACAACATCCAGGGCATCACCAAGCCAGCTAT 381232 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||| || ||||||||||||||||| |||| || | |||| || |||| Sbjct 381231 CCGTCGTCTGGCCCGCCGTGGTGGAGTCAAGCGAATCTCCGGTCTAATCTACGAGGAGAC 381172 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| |||||||| ||| || |||| ||||| || || ||||| Sbjct 381171 CCGAGGCGTTCTCAAGGTCTTCCTCGAGAATGTCATCCGCGATGCGGTCACATACACCGA 381112 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | ||||| ||||| Sbjct 381111 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTTGTCTACGCTCTCAAACGCCAAGG 381052 Query 16672 CCG 16674 || Sbjct 381051 TCG 381049 >seq2015 Length=15006 Score = 172 bits (190), Expect = 9e-39 Identities = 184/243 (76%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | |||||||| |||||||| || ||||||||||||||||| Sbjct 8243 CGCCAAGCGTCACCGTAAGGTGCTTCGAGACAACATCCAGGGCATCACCAAGCCAGCTAT 8184 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||| |||||||| || || ||||| |||| || | |||| || |||| Sbjct 8183 CCGTCGTCTGGCCCGTCGTGGCGGCGTGAAGCGAATCTCCGGCCTCATCTACGAGGAGAC 8124 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | |||||| ||| || |||| ||||| || || ||||| Sbjct 8123 CCGAGGCGTTCTCAAGGTTTTCCTCGAGAATGTCATCCGCGATGCGGTCACATACACCGA 8064 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | ||||| ||||| Sbjct 8063 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTTGTCTACGCTCTCAAACGCCAAGG 8004 Query 16672 CCG 16674 || Sbjct 8003 TCG 8001 >seq1291 Length=339743 Score = 172 bits (190), Expect = 9e-39 Identities = 184/243 (76%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | |||||||| |||||||| || ||||||||||||||||| Sbjct 331632 CGCCAAGCGTCACCGTAAGGTGCTTCGAGACAACATCCAGGGCATCACCAAGCCAGCTAT 331691 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||| || ||||| || |||||||| |||| || | |||| || |||| Sbjct 331692 CCGTCGTCTGGCCCGCCGTGGAGGGGTCAAGCGAATCTCCGGCCTAATCTACGAGGAGAC 331751 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| ||||||| ||| || |||| ||||| || || ||||| Sbjct 331752 CCGAGGCGTTCTCAAGGTCTTCCTGGAGAATGTCATCCGCGATGCGGTCACATACACCGA 331811 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | ||||| ||||| Sbjct 331812 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTTGTCTACGCTCTCAAACGCCAAGG 331871 Query 16672 CCG 16674 || Sbjct 331872 TCG 331874 >seq213 Length=1041034 Score = 129 bits (142), Expect = 9e-26 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 16484 CCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTAT 16543 |||||||||||||||||||| |||||||| || || ||||| |||| || | |||| Sbjct 372437 CCAGCTATCCGTCGTCTGGCCCGTCGTGGCGGCGTGAAGCGAATCTCCGGCCTCATCTAC 372378 Query 16544 GAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCAC 16603 || |||| || | ||| | ||| | |||||| ||| || |||| ||||| || Sbjct 372377 GAGGAGACCCGAGGCGTTCTCAAGGTTTTCCTCGAGAATGTCATCCGCGATGCGGTCACA 372318 Query 16604 TATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAA 16663 || ||||||||||| || || ||||| |||||| ||||||| | ||||| || | ||| Sbjct 372317 TACACCGAGCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTTGTCTACGCTCTCAAA 372258 Query 16664 CGTCAAGGCCG 16674 || ||||| || Sbjct 372257 CGCCAAGGTCG 372247 >seq2 Length=5327356 Score = 84.2 bits (92), Expect = 3e-12 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | ||| || || |||||||| || ||||||||||| || || Sbjct 1440025 CGCCAAGCGTCACCGTAAAGTTCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 1439966 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || ||||| || ||| | |||| || | |||| || || | Sbjct 1439965 CCGCCGCCTGGCCCGACGAGGTGGCGTGAAGAGAATCTCGGGGCTCATCTACGAGGAAAC 1439906 Query 16552 TCGTGATGTTTTGAAG 16567 || | |||||| ||| Sbjct 1439905 ACGCGGTGTTTTAAAG 1439890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073089779444