Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq1531 172 6e-38 >seq1531 Length=8964412 Score = 172 bits (190), Expect = 6e-38 Identities = 562/871 (65%), Gaps = 16/871 (2%) Strand=Plus/Minus Query 21170 GACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCT 21229 ||||| | ||||| || || || || | || | || || || || || |||| || Sbjct 403547 GACATCACCCCCATCTTCTGGTACTCTCCCACCTTCTTCTCAAAGAAGTTGCTCTTGCCC 403488 Query 21230 TCCAATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAA 21289 |||| || || ||||| || ||||| || ||||||| || | || || | || Sbjct 403487 TCCAGGGAGATGTTCTCCATGAAGTCAAAGGGGTTTTCAGTGTTGTAAATCTTGCTGCAC 403428 Query 21290 CCCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAA 21349 || ||| || ||||||||||||||||| || ||||| || ||| | || | Sbjct 403427 ATCAAGTCTCCCAACAATCTATCTGCTACAAACTCAATATACTGTTTCATCAGGTCTTGA 403368 Query 21350 TTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACG 21409 ||||| || |||| || || ||||| || | ||||||||| || || || |||| Sbjct 403367 TTCATCCCAATCAGCTTCACGGGAAGGGCGTCTGTCAAAAACTCTTGCTCAATCTTGACG 403308 Query 21410 GCTTCAACAATTATAT--TTATTATC---CTAGATGTACTAGGGGGATACAATAATTGTT 21464 || | || || | | | |||| || | | | | | || | | || Sbjct 403307 GCACTGTCTATAATCTGGTGAATATCTGCCTCGCT----TGGCCTGTTA-ACCAGGTGGC 403253 Query 21465 TAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAG 21524 ||||||||| ||| ||||| ||| |||| || ||||| || || || | || || | Sbjct 403252 TAAACATCAGACAGGCAAACTCAGTGTGCATCCCCTCATCTCTGCTGATCAGCTCGTTGG 403193 Query 21525 AAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTC 21584 | || || | || ||||| ||||||||||| || ||||| ||||| | ||||| | | Sbjct 403192 AGAAAGTCAGCCCTGGCATCAATCCTCTCTTCTTCAACCAGAATATAGCTGCAAAGGACC 403133 Query 21585 CTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATT 21644 | || || || || || || || || || || ||||| | ||||| || | || | | Sbjct 403132 CAGAGAAAAAGATCCCTTCCACAGCTGCGAAAGCAACCACACGTTCCCCAAAAGTGGCTC 403073 Query 21645 CTT--TATCCAATATCCATTTTTCTGCCCATTTTGCCTT-TTCTTTAATACAATCAATTG 21701 | |||||| ||| | ||||| | ||||| ||||||| |||| | | Sbjct 403072 GCAGGTCTCCAAT--CCACCTGAGGGCCCACTCAGCCTTCTTCTTTAC-ACAAGGTGTGG 403016 Query 21702 TATCAATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNN 21761 | || || || || || ||||| ||||| |||| ||| ||| Sbjct 403015 TCTCGATTGCATTAAACAGATGCTTTTTCTCATGCGGATCCTCAATGTAGGTGTCGATCA 402956 Query 21762 NNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATC 21821 ||| |||||||||||||| || || || || || ||||| || || || || || | Sbjct 402955 AGAGACTGTACATTTCAGAATGGATGTTCTCAATGGCAATCTGGAAGCCATAGAAGCACC 402896 Query 21822 TTGCCTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTC 21881 | ||||| | |||| ||||| || |||| | ||| || ||| | || || | Sbjct 402895 TGGCCTCGGTCAATTGCACCTCTTTGTAGAATCTCTCTACCAGATTCTCACTGACGATAC 402836 Query 21882 CATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTA 21941 ||||||| || ||||| |||||||| || | || || || | | |||||| || || | Sbjct 402835 CATCACTAGCTGCAAAGAATGCCAAAATGTACTTGATGAAGTGTTTTTCGTTGTCAGTGA 402776 Query 21942 ATTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAG 22001 | |||||| || || || || |||||||| || |||||||| || | Sbjct 402775 GACTCCTCCAATGGTCCAAGTCCTTACCTATGTCTACTTCCTCCGTTGTCCAGAATGACG 402716 Query 22002 CAATAGCCTTTTTATACATAATCCAGATATC 22032 | | ||||| || ||||| | |||||| || Sbjct 402715 CCACGGCCTTCTTGTACATGAACCAGATGTC 402685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531885454661920