Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1531 329 4e-85 seq1648 141 1e-28 seq1787 98.7 1e-15 >seq1531 Length=8964412 Score = 329 bits (364), Expect = 4e-85 Identities = 613/897 (68%), Gaps = 5/897 (1%) Strand=Plus/Minus Query 32998 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33057 ||||| || ||||| || ||||| || ||||| || || || || || | || || Sbjct 403547 GACATCACCCCCATCTTCTGGTACTCTCCCACCTTCTTCTCAAAGAAGTTGCTCTTGCCC 403488 Query 33058 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 33117 |||| || || || |||||||| ||||| || || | || ||||| || | | Sbjct 403487 TCCAGGGAGATGTTCTCCATGAAGTCAAAGGGGTTTTCAGTGTTGTAAATCTTGCTGCAC 403428 Query 33118 CCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAA 33177 ||| || | ||||||||| || || || || ||||| |||||||| || | Sbjct 403427 ATCAAGTCTCCCAACAATCTATCTGCTACAAACTCAATATACTGTTTCATCAGGTCTTGA 403368 Query 33178 TTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACC 33237 ||||| || || || || || ||||| || | || | ||| ||||| ||||| || Sbjct 403367 TTCATCCCAATCAGCTTCACGGGAAGGGCGTCTGTCAAAAACTCTTGCTCAATCTTGACG 403308 Query 33238 GCATCTGT-TATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAA 33296 ||| |||| |||||| || | | || || || | | | || |||| Sbjct 403307 GCA-CTGTCTATAATCTGGTGAATATCTGCCTCGCTTGGCCTGTTAACCAGGTGGCTAAA 403249 Query 33297 CATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAA 33356 ||||| ||| || || || ||||| ||||| ||||| || || || |||||||| || Sbjct 403248 CATCAGACAGGCAAACTCAGTGTGCATCCCCTCATCTCTGCTGATCAGCTCGTTGGAGAA 403189 Query 33357 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGA 33416 || || || ||||| | || | ||| || | ||| ||||| | || || || ||||| Sbjct 403188 AGTCAGCCCTGGCATCAATCCTCTCTTCTTCAACCAGAATATAGCTGCAAAGGACCCAGA 403129 Query 33417 AAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT--- 33473 || ||||| ||||| || || || || |||| | | || ||| || ||| | Sbjct 403128 GAAAAAGATCCCTTCCACAGCTGCGAAAGCAACCACACGTTCCCCAAAAGTGGCTCGCAG 403069 Query 33474 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 33533 ||| |||||| | | ||||| || |||||||| ||||||||||| | || || || Sbjct 403068 GTCTCCAATCCACCTGAGGGCCCACTCAGCCTTCTTCTTTACACAAGGTGTGGTCTCGAT 403009 Query 33534 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACT 33593 |||||||| |||| ||||| |||| ||| | || || || |||||||| ||||| Sbjct 403008 TGCATTAAACAGATGCTTTTTCTCATGCGGATCCTCAATGTAGGTGTCGATCAAGAGACT 402949 Query 33594 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 33653 |||||||| ||||| ||||| |||||||| ||||| || || ||||| || || ||||| Sbjct 402948 GTACATTTCAGAATGGATGTTCTCAATGGCAATCTGGAAGCCATAGAAGCACCTGGCCTC 402889 Query 33654 GGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACT 33713 ||| | || || ||| | | |||| || ||| ||| ||| | || || || ||||| Sbjct 402888 GGTCAATTGCACCTCTTTGTAGAATCTCTCTACCAGATTCTCACTGACGATACCATCACT 402829 Query 33714 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATT 33773 |||||||| || ||||| | | || || || | |||||||| || || | | Sbjct 402828 AGCTGCAAAGAATGCCAAAATGTACTTGATGAAGTGTTTTTCGTTGTCAGTGAGACTCCT 402769 Query 33774 CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGC 33833 ||||| | | || ||| ||| |||||||| ||| |||||| ||||| ||| | || Sbjct 402768 CCAATGGTCCAAGTCCTTACCTATGTCTACTTCCTCCGTTGTCCAGAATGACGCCACGGC 402709 Query 33834 CTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATT 33890 ||| || |||||| ||||||||| | | || || || || || || || | ||| Sbjct 402708 CTTCTTGTACATGAACCAGATGTCGTGGTTCTGTATAGGAAAGATGACGAAGCGATT 402652 >seq1648 Length=77580 Score = 141 bits (156), Expect = 1e-28 Identities = 425/654 (65%), Gaps = 3/654 (0%) Strand=Plus/Plus Query 33012 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33071 ||| ||||| ||| |||| | || || ||||| || | || || | | || ||||| Sbjct 8018 TTTCTGGTACTCAGCCACCCTCTTCTCAAAAAAGTTTGCCTTCCCCTGGAGGGAGATATT 8077 Query 33072 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 33131 |||||| || |||||||| || || ||||| || | | | | || | | Sbjct 8078 TTCCATAAAGTCAAACGGGTTTTCCACGGAATAAACCTTCGGACAGCTGAGCTCTGCCAG 8137 Query 33132 CAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 33191 || | || || || || || || || |||||||||| | | ||||| || || | Sbjct 8138 CAGCCGGTCTGCTACAAACTCAATGTAGGTTTTCATCAGCTGTGAGTTCATCCCGATCAT 8197 Query 33192 TTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 33251 | || | | ||| | ||||| || || || || || || || | || | || Sbjct 8198 GTCCACCGACATGGCCTCCGTAAGGAACTCCTGCTCGATACTGACGGCCTGGGTGACGAT 8257 Query 33252 AGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAA 33311 | | || | || || || || || | || |||||||||| || || ||||| Sbjct 8258 CTGTGTCACTCTGTCCGGGCTGGGCGGGTGGATCAAGTGTTTAAACAACAGGCAGGCGAA 8317 Query 33312 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCAT 33371 || ||||||| |||||||| | |||||||||||| || || || || || || ||||| Sbjct 8318 CTCACAGTGCAAGCCCTCGTCACGACTAATTAGTTCATTTGAGAAGGTCAGGCCTGGCAT 8377 Query 33372 TAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTC 33431 || || || || || ||||| || |||| ||| ||||| || || ||||||| ||| || Sbjct 8378 CAGCCCGCGTTTCTTTAGCCAGAAAATGGCAGCAAATGACCCTGAGAAGAAGACTCCCTC 8437 Query 33432 TACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG-CTGTCATG--TATCCACTT 33488 || ||||| ||||| | || | ||| || | | || | || | || ||||||| Sbjct 8438 CACGGCAGCGAAGGCGACCAGCCGCTCCCCGAAGCTGGTGTCTTTACTGGCGATCCACTG 8497 Query 33489 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 33548 | ||||| || |||||| | ||||| || | || || | || || || Sbjct 8498 CAGCGCCCAGTCCGCCTTCCTGCGCACACAGGGGAGGGTCTCCACTGCCCGGAACAGCCG 8557 Query 33549 GtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATG 33608 | | | || || | || || || |||| || || ||||| ||||| || Sbjct 8558 CTGTCTCTCCCCCGGGTCCCGGATGTACGTGTCAATCAGCAGGCTGTACATCTCCGAGTG 8617 Query 33609 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 33662 | ||| || ||||| ||||| || || |||||||| | |||||| | || ||| Sbjct 8618 GACGTTCTCCATGGCGATCTGGAACCCATAGAAACACCGAGCCTCCGGAACCTG 8671 >seq1787 Length=2284422 Score = 98.7 bits (108), Expect = 1e-15 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 ||||||| || || || || |||||||||||||||||||| || || || |||||||| Sbjct 1959411 AACATCAGGCAGGCAAAGTCACAGTGCAGACCCTCGTCTCTGCTGATCAGCTCGTTGGAG 1959470 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 ||||| || || ||||| || || | ||| || ||||| || || | ||| || || || Sbjct 1959471 AACGTCAGCCCAGGCATCAGACCTCTCTTCTTCAGCCAGAAAATAGCAGCAAAGGAACCT 1959530 Query 33415 GAAAAGA 33421 |||| || Sbjct 1959531 GAAATGA 1959537 Score = 82.4 bits (90), Expect = 1e-10 Identities = 102/139 (73%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 33412 CCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 33471 || || ||||||||||| ||||| ||||| ||||||| | | ||| || || ||| Sbjct 1959821 CCTGAGAAGAAGATTCCCTCTACAGCAGCGAAGGCAACCACACGCTCCCCGAAAGTGGCT 1959880 Query 33472 C---TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 33528 |||| |||||| | | ||||| || |||||||| || ||||| |||| || Sbjct 1959881 TCCTTGTCCCCGATCCACCTGAGTGCCCAGTCAGCCTTCTTCTTCACACAGGGCAGGGTC 1959940 Query 33529 TCTATGGCATTAAAGAGAT 33547 ||||||||||| ||||||| Sbjct 1959941 TCTATGGCATTGAAGAGAT 1959959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622929227973280