Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1224 87.8 5e-12 >seq1224 Length=3633418 Score = 87.8 bits (96), Expect = 5e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 111312 CATTTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTG 111371 || ||||| | || || || ||||| | ||||| ||| | | || || || || Sbjct 3004295 CAGTTTCCCTTGCTGACCACGAAGCGTGTGTTTTGGAGGGGGGTAGCTGAGGAGCTCTTG 3004354 Query 111372 TGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGG 111431 |||||| | | || |||||||| | |||||| | | ||||| || | || ||| Sbjct 3004355 TGGTTTGTCAGGGGCTCTACAAATGGCACAGAACTTTCTGACAAAAACGTGCACATCTGG 3004414 Query 111432 GATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGACAACGAAGAAGGT 111491 || | ||||| ||||||||||| || || ||| || | || | || || || Sbjct 3004415 GACGCCAATGGCTCACGTGACTTCCTGGACAAGCGTGGACTGAGCCACTATGAGGAGGGA 3004474 Query 111492 GATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAA 111544 || ||||| || || ||||| || || ||| | |||||||||||||| ||||| Sbjct 3004475 GACCTCGGCCCTGTGTACGGCTTCCAGTGGAGGCACTTTGGTGCAGAATACAA 3004527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303315058204856