Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1490 140 2e-28 seq1467 140 2e-28 seq1136 140 2e-28 seq1843 136 3e-27 seq979 136 3e-27 seq336 136 3e-27 seq125 136 3e-27 seq213 127 1e-24 seq1508 116 2e-21 seq1258 116 2e-21 seq1190 116 2e-21 seq1456 105 4e-18 seq1001 96.9 2e-15 seq317 91.5 1e-13 >seq1490 Length=233631 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 113932 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 113873 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 113872 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 113838 >seq1467 Length=273372 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 6160 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 6219 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 6220 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 6254 >seq1136 Length=385506 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 146562 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 146621 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 146622 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 146656 >seq1843 Length=27461 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 21433 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 21492 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||| ||||||||||||||||||| Sbjct 21493 TAATCCATTCATGCGTGTCACTAATTAGATGACGA 21527 >seq979 Length=438673 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 2743 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 2802 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||||||||||||||||||||| || Sbjct 2803 TAATCCATTCATGCGCGTCACTAATTAGATGATGA 2837 >seq336 Length=836981 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||| ||||||||||||||||||||||||||| || |||||||| Sbjct 745448 AAGCCCGTTCCCTTGGTTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 745389 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 745388 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 745354 Score = 82.4 bits (90), Expect = 5e-11 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 19966 TTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATTTAGCCTTA 20023 |||||||||||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 742592 TTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGTGTCCGTATTTAGCCTTA 742535 >seq125 Length=1169358 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||| |||||||||||||||||||||||||||||||| || |||||||| Sbjct 149827 AAGCCCGTTCCTTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 149886 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 149887 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 149921 Score = 91.5 bits (100), Expect = 1e-13 Identities = 71/86 (83%), Gaps = 9/86 (10%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAA---------GTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTAT 19997 ||||||||||||| |||||||||||||||||||||||||||||||||| ||| Sbjct 152290 CTCTCTCTTCAAACTACTACTAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGTTAT 152349 Query 19998 CGGTCTCGCGGTAATATTTAGCCTTA 20023 |||||||| | |||||||||||| Sbjct 152350 CGGTCTCGTGTCCGTATTTAGCCTTA 152375 >seq213 Length=1041034 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||| |||||||||||||||||| || |||| ||| Sbjct 230881 AAGCCCGTTCCCTTGGCTGTGGTTTTGCTAGATAGTAGATAGGGACAGTGGAAATCCCGT 230940 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||| ||||||||||||||| Sbjct 230941 TAATCCATTCATGCGCGTCCCTAATTAGATGACGA 230975 Score = 116 bits (128), Expect = 2e-21 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 232549 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 232608 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 232609 GTCCGTATTTAGCCTTA 232625 >seq1508 Length=204128 Score = 116 bits (128), Expect = 2e-21 Identities = 78/87 (90%), Gaps = 5/87 (6%) Strand=Plus/Plus Query 25910 TCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTT 25964 |||||||||||||||||||||||||||||||||| | || |||||||||||||| | Sbjct 202606 TCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGCGACAGTGGGAATCTCGTTAATCCAT 202665 Query 25965 TCATGCGCGTCACTAATTAGATGACGA 25991 |||||||||||||||||||||||||| Sbjct 202666 CCATGCGCGTCACTAATTAGATGACGA 202692 >seq1258 Length=356075 Score = 116 bits (128), Expect = 2e-21 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 163 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 222 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 223 GTCCGTATTTAGCCTTA 239 >seq1190 Length=1587 Score = 116 bits (128), Expect = 2e-21 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1231 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 1172 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 1171 GTCCGTATTTAGCCTTA 1155 >seq1456 Length=293654 Score = 105 bits (116), Expect = 4e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 || ||||| | || ||||| |||||| || || ||||||||||| || || ||||| || Sbjct 120561 TTTCCACCACGCAGACGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCG 120502 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 |||| || | || || || ||||| ||||| || || || || ||||| || | Sbjct 120501 GACAGGGTGCGGCCATCTTCCAACTGTTTGCCGGCGAAGATGAGACGCTGTTGGTCTGGT 120442 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 |||| ||| || ||||| || || ||| || |||| || || ||| ||| Sbjct 120441 GGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCTGATGGCTCA 120382 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || | || || || || || |||| |||||| ||||| ||||||||| Sbjct 120381 ACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTTTTGACGAAGATCTGCATG 120331 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || || | || ||| | ||||| || |||||||||||||| || || ||||| |||||| Sbjct 119646 CCTCCACGCAGACGGAGAACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGAC 119587 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | || || || ||||| || || || || || || | ||| Sbjct 119586 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGG 119527 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || ||||| || || ||||||||| | | |||||| || ||| Sbjct 119526 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTTTCAATGGTATCTGACGGCTCCACT 119467 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 |||| || || || || || || | ||| ||||| |||||||||||| Sbjct 119466 TCTAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACAAATATCTGCATG 119419 Score = 87.8 bits (96), Expect = 1e-12 Identities = 157/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || || | || ||| | ||| || || |||||||||||||| || || ||||| || ||| Sbjct 119418 CCTCCACGCAGACGGAGCAC-AAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAC 119360 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || || | || || | || || |||||||| || || || || || || | |||| Sbjct 119359 AAGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGG 119300 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || ||||| || || ||| || |||| || ||| || || ||| Sbjct 119299 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATAGTGTCGGATGGCTCGACT 119240 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || || || || || | |||||| ||||| ||||||||| Sbjct 119239 TCAAGGGTGATGGTCTTGCCTGTGAGGGTTTTGACGAAGATCTGCATG 119192 >seq1001 Length=3733086 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || ||||| |||||| || || ||||||||||| || || ||||| || ||| Sbjct 1254407 CCACCACGCAGACGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAC 1254348 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | || || |||||||| || || || || || || | |||| Sbjct 1254347 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCTGGGGGG 1254288 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || ||||| || || ||| || |||| || || || ||||| Sbjct 1254287 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGATGGCTCAACC 1254228 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || | || || || || || |||| ||| |||||||| |||||||| ||| Sbjct 1254227 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATATTT 1254177 >seq317 Length=4125 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || ||||| ||||| || || ||||||||||| || || ||||| || ||| Sbjct 1455 CCACCACGCAGACGCAGGACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAC 1396 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | || || |||||||| || || || ||||| || | ||| Sbjct 1395 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGCGGG 1336 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || ||||| || || ||| || |||| || || ||| || ||| Sbjct 1335 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCTGATGGCTCGACT 1276 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || || || || || | ||| |||||||| ||||||||| Sbjct 1275 TCCAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACGAAGATCTGCATG 1228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334937778353948