Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1531 318 7e-82 seq1787 91.5 2e-13 >seq1531 Length=8964412 Score = 318 bits (352), Expect = 7e-82 Identities = 613/898 (68%), Gaps = 7/898 (1%) Strand=Plus/Minus Query 32355 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 32414 ||||| || ||||| || ||||| || ||||| || || || || || | || || Sbjct 403547 GACATCACCCCCATCTTCTGGTACTCTCCCACCTTCTTCTCAAAGAAGTTGCTCTTGCCC 403488 Query 32415 TCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAAT 32474 || | || || || |||||||| || || || || | || ||||| || | | Sbjct 403487 TCCAGGGAGATGTTCTCCATGAAGTCAAAGGGGTTTTCAGTGTTGTAAATCTTGCTGCAC 403428 Query 32475 CCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAA 32534 ||| || | |||||||||||| ||||| || ||||| |||||||| || | Sbjct 403427 ATCAAGTCTCCCAACAATCTATCTGCTACAAACTCAATATACTGTTTCATCAGGTCTTGA 403368 Query 32535 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 32594 ||||| || || || || || ||||| || | || | ||| ||||| ||||| ||| Sbjct 403367 TTCATCCCAATCAGCTTCACGGGAAGGGCGTCTGTCAAAAACTCTTGCTCAATCTTGACG 403308 Query 32595 GCGTCTGT-TATAATAGATCTTACTGTTT-CTTCACTCGGTGGATACAATAAATGTTTAA 32652 || |||| |||||| | | | | | | || || || | | | || ||| Sbjct 403307 GCA-CTGTCTATAATCTGG-TGAATATCTGCCTCGCTTGGCCTGTTAACCAGGTGGCTAA 403250 Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 |||||| ||| || || || ||| | ||||| ||||| || || | |||||||| | Sbjct 403249 ACATCAGACAGGCAAACTCAGTGTGCATCCCCTCATCTCTGCTGATCAGCTCGTTGGAGA 403190 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 32772 | || || || ||||| | || | ||| || | ||| ||||| | ||||| || |||| Sbjct 403189 AAGTCAGCCCTGGCATCAATCCTCTCTTCTTCAACCAGAATATAGCTGCAAAGGACCCAG 403130 Query 32773 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT-- 32830 | || || || ||||| || || || || |||| | | || ||| || ||| | Sbjct 403129 AGAAAAAGATCCCTTCCACAGCTGCGAAAGCAACCACACGTTCCCCAAAAGTGGCTCGCA 403070 Query 32831 -GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 32889 ||| |||||| | | ||||| || |||||||| ||||||||||| | ||||| | Sbjct 403069 GGTCTCCAATCCACCTGAGGGCCCACTCAGCCTTCTTCTTTACACAAGGTGTGGTCTCGA 403010 Query 32890 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 32949 | |||||||| |||| ||||| |||| ||| | || || || || ||||| |||| Sbjct 403009 TTGCATTAAACAGATGCTTTTTCTCATGCGGATCCTCAATGTAGGTGTCGATCAAGAGAC 402950 Query 32950 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCT 33009 | |||||||| ||||| ||||| |||||||| || || || || |||||||| || |||| Sbjct 402949 TGTACATTTCAGAATGGATGTTCTCAATGGCAATCTGGAAGCCATAGAAGCACCTGGCCT 402890 Query 33010 CGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCAC 33069 |||| | || || ||| | | |||| ||| | | ||| ||| | || || || |||| Sbjct 402889 CGGTCAATTGCACCTCTTTGTAGAATCTCTCTACCAGATTCTCACTGACGATACCATCAC 402830 Query 33070 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTAT 33129 | |||||||| || ||||| | | || || || | |||||||| || || | Sbjct 402829 TAGCTGCAAAGAATGCCAAAATGTACTTGATGAAGTGTTTTTCGTTGTCAGTGAGACTCC 402770 Query 33130 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 33189 |||||| | | || ||| ||| || ||||| ||| |||||| ||||| ||| | | Sbjct 402769 TCCAATGGTCCAAGTCCTTACCTATGTCTACTTCCTCCGTTGTCCAGAATGACGCCACGG 402710 Query 33190 CCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATT 33247 |||| || ||||| ||||||||| || | || || ||||| || || || | ||| Sbjct 402709 CCTTCTTGTACATGAACCAGATGTCGTGGTTCTGTATAGGAAAGATGACGAAGCGATT 402652 >seq1787 Length=2284422 Score = 91.5 bits (100), Expect = 2e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 32652 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 32711 ||||||| || || || || ||||| |||||||||||||| || || | |||||||| Sbjct 1959411 AACATCAGGCAGGCAAAGTCACAGTGCAGACCCTCGTCTCTGCTGATCAGCTCGTTGGAG 1959470 Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 32771 ||||| || || ||||| || || | ||| || ||||| || || | ||||| || || Sbjct 1959471 AACGTCAGCCCAGGCATCAGACCTCTCTTCTTCAGCCAGAAAATAGCAGCAAAGGAACCT 1959530 Query 32772 GAAAAGAAAA 32781 |||| || || Sbjct 1959531 GAAATGACAA 1959540 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 32931 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 32990 || || || ||||| || || |||||||| || || ||||| |||||||| || || || Sbjct 1960232 TAGGTGTCTATCAAGAGGCTGTACATTTCAGAGTGGATGTTCTCAATGGCGATCTGGAAG 1960291 Query 32991 CCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCT 33026 ||||||||||| | ||||| |||| ||| |||||| Sbjct 1960292 CCGTAGAAGCACCCGGCCTCTGTAACCTGCACTTCT 1960327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633613719716800