Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq317 122 8e-23 seq1456 109 5e-19 seq1001 102 7e-17 >seq317 Length=4125 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || |||| || || ||||||| | ||||||||| | ||| Sbjct 1457 ATGCAGATCTTCGTTAAAACCCTGACAGGCAAGACCATCACCCTGGAAGTGGAGCCATCT 1516 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| || || || ||||| |||||| Sbjct 1517 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCACCAGACCAA 1576 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || || ||||||| ||||| || ||| ||||| Sbjct 1577 CAGCGTCTCATCTTTGCCGGCAAGCAGTTGGAAGATGGCCGCACCCTGTCCGACTACAAC 1636 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || ||| | ||||| Sbjct 1637 ATCCAGAAGGAGTCAACCCTTCATCTGGTGCT 1668 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || ||||||| | ||||| ||| | ||| Sbjct 1001 ATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAAGTTGAGCCATCT 1060 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| || || || || || |||||| Sbjct 1061 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAA 1120 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || ||||||||| ||||| || ||| ||||| Sbjct 1121 CAGCGTCTCATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTGTCCGACTACAAC 1180 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || || || || Sbjct 1181 ATCCAGAAGGAGTCAACACTCCACTTGGTTCT 1212 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| | ||||| ||| | || Sbjct 1229 ATGCAGATCTTCGTGAAGACCCTCACAGGCAAGACCATCACCCTGGAAGTCGAGCCATCA 1288 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| || || || || || |||||| Sbjct 1289 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCGCCAGACCAA 1348 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | ||||||| ||||| || ||| ||||| Sbjct 1349 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTGTCCGACTACAAC 1408 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||| || || || || || Sbjct 1409 ATCCAGAAGGAGAGCACCCTCCACTTGGTCCT 1440 >seq1456 Length=293654 Score = 109 bits (120), Expect = 5e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || |||| || || ||||||| |||| || ||| | || Sbjct 120332 ATGCAGATCTTCGTCAAAACCCTGACAGGCAAGACCATCACCCTCGAGGTTGAGCCATCA 120391 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| || || || ||||| |||||| Sbjct 120392 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCACCAGACCAA 120451 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || ||||||||||| || ||||||| ||||| || ||| ||||| Sbjct 120452 CAGCGTCTCATCTTCGCCGGCAAACAGTTGGAAGATGGCCGCACCCTGTCCGACTACAAC 120511 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 || || || || ||| || || || ||||| | || | || ||||| || Sbjct 120512 ATCCAGAAGGAGAGCACCCTCCACTTGGTGCTGCGTCTGCGTGGTGGAAACTA 120564 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/212 (70%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | || || || ||||||| | ||||| ||| | || Sbjct 119193 ATGCAGATCTTCGTCAAAACCCTCACAGGCAAGACCATCACCCTTGAAGTCGAGCCATCC 119252 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||||||| | ||| || ||| ||||| || || || || || ||||| Sbjct 119253 GACACTATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 119312 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | ||||||| ||||| || ||| ||||| Sbjct 119313 CAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCTTGTCCGACTACAAC 119372 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||| || || || ||||| Sbjct 119373 ATCCAGAAGGAGAGCACTCTCCACTT-GTGCT 119403 >seq1001 Length=3733086 Score = 102 bits (112), Expect = 7e-17 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 24990 AACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTG 25049 ||| ||| ||||| || || || ||||| |||| || || ||||||| | || || Sbjct 1254172 AACAGAAATATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTT 1254231 Query 25050 GAGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCA 25109 ||| | || ||||| |||||| | ||| || ||| ||||| || || || || Sbjct 1254232 GAGCCATCCGACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCC 1254291 Query 25110 CCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGC 25169 || ||||| ||||| |||| ||||||||||| || | ||||||| ||||| || | Sbjct 1254292 CCAGACCAGCAGCGTCTTATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCC 1254351 Query 25170 GATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || || || || ||| || || || ||||| Sbjct 1254352 GACTACAACATCCAGAAGGAGAGCACCCTCCACTTGGTGCT 1254392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433315811025020