Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1531 241 1e-58 >seq1531 Length=8964412 Score = 241 bits (266), Expect = 1e-58 Identities = 431/624 (69%), Gaps = 4/624 (1%) Strand=Plus/Minus Query 93084 ACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGAT-ATCAACTCATTGCTG 93142 |||| | || ||||| || || || | || || |||| || | |||| ||| ||| | Sbjct 403249 ACATCAGACAGGCAAACTCAGTGTGCATCCCCTCATCTC-TGCTGATCAGCTCGTTGGAG 403191 Query 93143 AATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCA 93202 || || | ||||| | || ||||| ||||| | ||| ||||| | ||||| ||| Sbjct 403190 AAAGTCAGCCCTGGCATCAATCCTCTCTTCTTCAACCAGAATATAGCTGCAAAGGACCCA 403131 Query 93203 GaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCG-GA 93261 || ||||| || |||||||| ||||| || || || | |||||| ||||| | || | Sbjct 403130 GAGAAAAAGATCCCTTCCACAGCTGCGAAAGCAACCACACGTTCCCCAAAAGTGGCTCGC 403071 Query 93262 ATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTC 93321 | || | ||||| | | ||||| || || || ||||| | ||||||| || || Sbjct 403070 AGGTCTCCA-ATCCACCTGAGGGCCCACTCAGCCTTCTTCTTTACACAAGGTGTGGTCTC 403012 Query 93322 GATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAG 93381 ||| || ||||| || | | | ||| | || ||| ||||| || ||||| || || Sbjct 403011 GATTGCATTAAACAGATGCTTTTTCTCATGCGGATCCTCAATGTAGGTGTCGATCAAGAG 402952 Query 93382 AGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGC 93441 | |||||||||||||||| ||||| || ||||| ||||| || ||||| || || || Sbjct 402951 ACTGTACATTTCAGAATGGATGTTCTCAATGGCAATCTGGAAGCCATAGAAGCACCTGGC 402892 Query 93442 TTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATC 93501 || || | ||||| |||| | ||||||||||| ||||| ||| |||| |||||||| Sbjct 402891 CTCGGTCAATTGCACCTCTTTGTAGAATCTCTCTACCAGATTCTCACTGACGATACCATC 402832 Query 93502 GGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTT 93561 |||||||| || ||||| || | ||| || || ||||| || | || | || | Sbjct 402831 ACTAGCTGCAAAGAATGCCAAAATGTACTTGATGAAGTGTTTTTCGTTGTCAGTGAGACT 402772 Query 93562 ATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTC 93621 ||||| | | || || | || ||||| || ||||| || || || | Sbjct 402771 CCTCCAATGGTCCAAGTCCTTACCTATGTCTACTTCCTCCGTTGTCCAGAATGACGCCAC 402712 Query 93622 TGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATT 93681 || || |||||||| ||| ||||| || | || || ||||| ||||| || ||||| Sbjct 402711 GGCCTTCTTGTACATGAACCAGATGTCGTGGTTCTGTATAGGAAAGATGACGAAGCGATT 402652 Query 93682 AGGGTTATCTTTTAGTAACGGCTC 93705 | ||| || | ||||| ||||| Sbjct 402651 GGAGTTCTCCTGTAGTAGGGGCTC 402628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556844734565920