Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq317 136 3e-27 seq1456 122 7e-23 seq1001 116 3e-21 seq1446 95.1 1e-14 >seq317 Length=4125 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || |||||||| | || || || || |||| || |||||||| | | Sbjct 1457 ATGCAGATCTTCGTTAAAACCCTGACAGGCAAGACCATCACCCTGGAAGTGGAGCCATCT 1516 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || |||||||||||||| || ||||| || ||| Sbjct 1517 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCACCAGACCAA 1576 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||||||||| ||||| || ||| ||||||| | ||||| |||||| Sbjct 1577 CAGCGTCTCATCTTTGCCGGCAAGCAGTTGGAAGATGGCCGCACCCTGTCCGACTACAAC 1636 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTT 22448 || || || || || ||| | ||| | || |||| |||| || || || Sbjct 1637 ATCCAGAAGGAGTCAACCCTTCATCTGGTGCTGCGTCTGCGTGGTGGATT 1686 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| || ||||| || || | || || || || |||| ||||| || || | Sbjct 541 AAATATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCC 600 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 |||| ||| | || || |||| || || |||||||||||||| || || || || Sbjct 601 ATCCGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCGCCAGA 660 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 || || ||||| || ||||| || || ||| | || ||| ||||||| | || || || Sbjct 661 CCAGCAGCGTCTCATCTTTGCTGGGAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTA 720 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||| || ||||| |||||| | ||| | || |||| |||| || || Sbjct 721 CAACATCCAGAAAGAGTCCACCCTTCATCTTGTCCTGCGTCTGCGTGGTGG 771 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || ||||| || | | Sbjct 773 ATGCAGATCTTCGTGAAGACCCTCACAGGCAAGACCATCACCCTGGAAGTTGAGCCATCT 832 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || |||||||||||||| || || || || || Sbjct 833 GACACCATTGAAAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCGCCAGACCAG 892 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| ||||| ||||| || ||| ||||||| | ||||| |||||| Sbjct 893 CAGCGTCTCATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGCACCCTGTCCGACTACAAC 952 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || ||||| || ||| | ||| | || |||| |||| || || Sbjct 953 ATCCAGAAAGAGTCAACCCTTCATCTGGTGCTGCGTCTGCGTGGTGG 999 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || ||||| || | | Sbjct 1001 ATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAAGTTGAGCCATCT 1060 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || |||||||||||||| || || || || ||| Sbjct 1061 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAA 1120 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||||||||| ||| |||| ||| ||||||| | ||||| |||||| Sbjct 1121 CAGCGTCTCATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTGTCCGACTACAAC 1180 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | || || ||| | || |||| || || Sbjct 1181 ATCCAGAAGGAGTCAACACTCCACTTGGTTCTCCGTCTGCGTGGTGG 1227 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || ||||| || | | Sbjct 1229 ATGCAGATCTTCGTGAAGACCCTCACAGGCAAGACCATCACCCTGGAAGTCGAGCCATCA 1288 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || |||||||||||||| || || || || ||| Sbjct 1289 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCGCCAGACCAA 1348 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||||||||| ||| | || ||| ||||||| | ||||| |||||| Sbjct 1349 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTGTCCGACTACAAC 1408 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || |||| | || || || |||| |||| || || Sbjct 1409 ATCCAGAAGGAGAGCACCCTCCACTTGGTCCTGCGTCTGCGTGGTGG 1455 >seq1456 Length=293654 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || ||||| | || || || || ||||||||||||| || | | Sbjct 119876 ATGCAGATTTTCGTCAAAACCCTCACAGGCAAGACCATCACTCTTGAAGTTGAGCCGTCA 119935 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || |||||||||||||| || || || || || Sbjct 119936 GACACCATCGAGAACGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 119995 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| || || ||||| ||| | || ||| ||||||| | || || |||||| Sbjct 119996 CAGCGTCTTATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 120055 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || ||||| |||||| | || | || |||| |||| ||||| Sbjct 120056 ATCCAGAAAGAGTCCACCCTCCACCTTGTGCTGCGTCTGCGTGGAGG 120102 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| | || || || || |||| ||||| || || | || Sbjct 118965 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCATCC 119024 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || |||||||||||||| || || || || || Sbjct 119025 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 119084 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| || || ||||| ||| | || ||| ||||||| | || || |||||| Sbjct 119085 CAGCGTCTTATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 119144 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || |||||| | || | || |||| |||| || || Sbjct 119145 ATCCAGAAGGAGTCCACCCTCCACCTTGTGCTGCGTCTGCGTGGTGG 119191 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || |||| |||||||| || | || Sbjct 119648 ATGCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACCCTTGAAGTCGAGCCATCC 119707 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || |||||||||||||| || || || || || Sbjct 119708 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 119767 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| || || ||||| ||| | || ||| ||||||| | || || |||||| Sbjct 119768 CAGCGTCTTATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 119827 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || |||||| | || | || |||| |||| || || Sbjct 119828 ATCCAGAAGGAGTCCACCCTCCACCTTGTGCTGCGTCTGCGTGGTGG 119874 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| | || || || || |||| || || || || | | Sbjct 120332 ATGCAGATCTTCGTCAAAACCCTGACAGGCAAGACCATCACCCTCGAGGTTGAGCCATCA 120391 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || |||||||||||||| || ||||| || ||| Sbjct 120392 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCACCAGACCAA 120451 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||||||||| || ||| ||||||| | ||||| |||||| Sbjct 120452 CAGCGTCTCATCTTCGCCGGCAAACAGTTGGAAGATGGCCGCACCCTGTCCGACTACAAC 120511 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || |||| | || || || |||| |||| || || Sbjct 120512 ATCCAGAAGGAGAGCACCCTCCACTTGGTGCTGCGTCTGCGTGGTGG 120558 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || |||| || |||||||| | | Sbjct 119420 ATGCAGATATTTGTGAAGACCCTCACAGGCAAGACCATCACCCTAGAAGTGGAGCCGTCA 119479 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || || || |||||||||||||| || ||||| || || Sbjct 119480 GATACCATTGAAAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCACCAGACCAG 119539 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| ||||| ||| | || ||| ||||||| | || || |||||| Sbjct 119540 CAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 119599 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || ||| | || || ||| | || |||| ||||| Sbjct 119600 ATCCAGAAGGAGAGCACTCTCCACTTGGTTCTCCGTCTGCGTGGAGG 119646 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || |||| || || ||||| | | Sbjct 120104 ATGCAGATCTTTGTGAAGACCCTGACAGGGAAGACCATCACCCTCGAGGTGGAGCCGTCA 120163 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || |||||||||||||| || || || || || Sbjct 120164 GACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 120223 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| ||||| ||| | || ||| |||||| | || || |||||| Sbjct 120224 CAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAAC 120283 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || ||||| |||||| | ||| | || |||| |||| || || Sbjct 120284 ATCCAGAAAGAGTCCACCCTTCATCTTGTCCTGCGTCTGCGTGGTGG 120330 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| | || || || || |||| |||||||| || | || Sbjct 119193 ATGCAGATCTTCGTCAAAACCCTCACAGGCAAGACCATCACCCTTGAAGTCGAGCCATCC 119252 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| || || |||||||||||||| || || || || || Sbjct 119253 GACACTATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 119312 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||||||||| ||| | || ||| ||||||| | ||||| |||||| Sbjct 119313 CAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCTTGTCCGACTACAAC 119372 Query 22399 ATTCAAAAAGA 22409 || || || || Sbjct 119373 ATCCAGAAGGA 119383 >seq1001 Length=3733086 Score = 116 bits (128), Expect = 3e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| || || || || || | || || || || |||| ||||| || || | Sbjct 1254177 AAATATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCC 1254236 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 |||| ||| | || | |||| || || |||||||||||||| || || || || Sbjct 1254237 ATCCGACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGA 1254296 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 || || |||||||| ||||||||||| ||| | || ||| ||||||| | ||||| || Sbjct 1254297 CCAGCAGCGTCTTATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTA 1254356 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTT 22448 |||||| || || || |||| | || || || |||| |||| || || || Sbjct 1254357 CAACATCCAGAAGGAGAGCACCCTCCACTTGGTGCTGCGTCTGCGTGGTGGATT 1254410 >seq1446 Length=3482675 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| || || || || || | || || || || |||| || || ||||| | Sbjct 1542119 AAATATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGCC 1542178 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | || ||| | || || | || || || |||||||||||||| || ||||| || Sbjct 1542179 TTCAGACACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCACCAGA 1542238 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 || || || || || || |||||||| ||| | || ||| ||||||| | ||||| || Sbjct 1542239 CCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTA 1542298 Query 22395 CAACATTCAAAA 22406 |||||| || || Sbjct 1542299 CAACATCCAGAA 1542310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419716193576020