Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq317 104 2e-17 seq1456 102 7e-17 >seq317 Length=4125 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | || || | ||| | || || ||||| || |||||||| || Sbjct 774 ATGCCACCACGCAGACGCAGGACAAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCA 715 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| || || || ||||| ||||||||||||| ||||| || Sbjct 714 GACAGGGTGCGGCCATCTTCCAGCTGCTTCCCAGCAAAGATGAGACGCTGCTGGTCTGGC 655 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| || ||||| ||||| || | | || | |||||||| | ||| Sbjct 654 GGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCGGATGGCTCG 595 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| ||||| || || ||||| |||||||| Sbjct 594 ACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 545 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | || || | ||| | || || ||||| || |||||||| ||| Sbjct 1002 ATGCCACCACGCAGACGCAGCACCAGATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCG 943 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| | || || ||||| ||||||||||||| ||||| || Sbjct 942 GACAGGGTGCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGC 883 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| || ||||| ||||| || | | ||||| |||||| | | || Sbjct 882 GGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCAGATGGCTCA 823 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| ||| | || ||||| || || || || || || ||||||||| Sbjct 822 ACTTCCAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACGAAGATCTGCATG 772 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | ||| || || | || || || || || |||||||| ||| Sbjct 1230 ATGCCACCACGCAGACGGAGAACCAAGTGGAGTGTTGACTCCTTCTGGATGTTGTAGTCG 1171 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| || || || || || ||||||||||||||||||| || Sbjct 1170 GACAGGGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGG 1111 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| || ||||| ||||| || | | || | |||||| | | || Sbjct 1110 GGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCAGATGGCTCA 1051 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| ||| | || ||||| ||||| || || || || ||||||||| Sbjct 1050 ACTTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCATG 1000 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| || | || || | ||| | || || || || || |||||||| ||| | Sbjct 1683 CCACCACGCAGACGCAGCACCAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAC 1624 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | || || |||||| | || || || || ||||||||||||||||||| || || Sbjct 1623 AGGGTGCGGCCATCTTCCAACTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGTGGG 1564 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 ||||| || ||||| ||||| || | | || | |||||| | | || || Sbjct 1563 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCAGATGGCTCCACT 1504 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 |||| ||| | || ||||| ||||| ||||| || || ||||||||| Sbjct 1503 TCCAGGGTGATGGTCTTGCCTGTCAGGGTTTTAACGAAGATCTGCATG 1456 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 || || || |||||||| ||| || || || ||||||||| || || || || || Sbjct 1419 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAG 1360 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 ||||||||||||||||| || || ||||| || ||||| ||||| || | | Sbjct 1359 ATGAGACGCTGTTGGTCTGGCGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTC 1300 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 || | |||||| | | ||||| |||| ||| | || ||||| || || || || || Sbjct 1299 TCGATGGTGTCTGATGGCTCGACTTCCAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACG 1240 Query 114372 AAAATCTGCATG 114383 || ||||||||| Sbjct 1239 AAGATCTGCATG 1228 >seq1456 Length=293654 Score = 102 bits (112), Expect = 7e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | || || | ||| | || || ||||| || |||||||| || Sbjct 120333 ATGCCACCACGCAGACGCAGGACAAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCA 120274 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || ||| |||||| || || || ||||| ||||||||||||| ||||| || Sbjct 120273 GACAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGG 120214 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| || ||||| ||||| || | | |||| |||||| | | || Sbjct 120213 GGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCTGACGGCTCC 120154 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || || | ||| | || || || ||||| || || ||||| ||||||||| || Sbjct 120153 ACCTCGAGGGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCATGCCT 120100 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 || || || |||||||| ||| || || || |||||| | ||||| || ||| || Sbjct 120522 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAACTGTTTGCCGGCGAAG 120463 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 ||||||||||||||||| || || ||||| || ||||| ||||| || | | Sbjct 120462 ATGAGACGCTGTTGGTCTGGTGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTC 120403 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 || | |||||| | | || || || | ||| | || ||||| ||||| ||||| || Sbjct 120402 TCGATGGTGTCTGATGGCTCAACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTTTTGACG 120343 Query 114372 AAAATCTGCATG 114383 || ||||||||| Sbjct 120342 AAGATCTGCATG 120331 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | || || | || | || || ||||| || |||||||| || Sbjct 120105 ATGCCTCCACGCAGACGCAGCACAAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCA 120046 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| || || || |||||| |||| |||||||| ||||| || Sbjct 120045 GACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCTGGG 119986 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| || ||||| ||||| || | | || | |||||| | | || Sbjct 119985 GGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATGGTGTCTGACGGCTCA 119926 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | || | || ||||| || || ||||| || |||||||||||| Sbjct 119925 ACTTCAAGAGTGATGGTCTTGCCTGTGAGGGTTTTGACGAAAATCTGCATG 119875 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 || || || |||||||| ||| || || || |||||| || || || || || || Sbjct 119383 TCCTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 119324 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 ||||||||||| ||||| || || ||||| || ||||| ||||| || | | Sbjct 119323 ATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTC 119264 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 || | ||||||| | ||||| || | ||| | || ||||| || || ||||| || Sbjct 119263 TCGATAGTGTCGGATGGCTCGACTTCAAGGGTGATGGTCTTGCCTGTGAGGGTTTTGACG 119204 Query 114372 AAAATCTGCATG 114383 || ||||||||| Sbjct 119203 AAGATCTGCATG 119192 Score = 86.0 bits (94), Expect = 5e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 || || || |||||||| || || || || |||||| || || || ||||| || Sbjct 119610 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 119551 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 ||||||||||| ||||| || || ||||| || ||||| ||||| || | | | Sbjct 119550 ATGAGACGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTT 119491 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 |||| ||| || | | || || || | ||| | || ||||| || || || || ||| Sbjct 119490 TCAATGGTATCTGACGGCTCCACTTCTAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACA 119431 Query 114372 AAAATCTGCATGGCT 114386 || ||||||||| || Sbjct 119430 AATATCTGCATGCCT 119416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420122582144496