Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1531 246 6e-60 seq1648 235 1e-56 seq2197 129 1e-24 seq1787 114 2e-20 >seq1531 Length=8964412 Score = 246 bits (272), Expect = 6e-60 Identities = 585/866 (68%), Gaps = 21/866 (2%) Strand=Plus/Plus Query 42289 AGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGG 42348 || |||| |||||||||| ||||||||||||||| | || |||||| | |||| Sbjct 402677 AGAACCACGACATCTGGTTCATGTACAAGAAGGCCGTGGCGTCATTCTGGACAACGGAGG 402736 Query 42349 AGATTGACCTGGCCAAGGACACGGCCGGCTGG--GAGTCACTGTCTGAGAACGAAAAGTT 42406 | | ||| | | |||||| || | ||| ||||| | |||| |||||||| Sbjct 402737 AAGTAGACATAGGTAAGGACTTGGACCATTGGAGGAGTCTCA--CTGACAACGAAAAACA 402794 Query 42407 TTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCT 42466 ||| |||| |||| |||| ||||| || || ||| || || |||| |||||| || Sbjct 402795 CTTCATCAAGTACATTTTGGCATTCTTTGCAGCTAGTGATGGTATCGTCAGTGAGAATCT 402854 Query 42467 GGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCA 42526 || || ||| ||||||||||| | ||||| | |||||||| |||||||| Sbjct 402855 GGTAGAGAGATTCTACAAAGAGGTGCAATTGACCGAGGCCAGGTGCTTCTATGGCTTCCA 402914 Query 42527 GATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCT 42586 ||| ||||| |||||| | || ||||| ||||| || || |||| ||||| Sbjct 402915 GATTGCCATTGAGAACATCCATTCTGAAATGTACAGTCTCTTGATCGACACCTACATTGA 402974 Query 42587 GGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAA 42646 |||||| ||| || ||||| || || || ||||| | || || | ||||| Sbjct 402975 GGATCCGCATGAGAAAAAGCATCTGTTTAATGCAATCGAGACCACACCTTGTGTAAAGAA 403034 Query 42647 GAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCC--CGACGCAACGTTCGGCGAGAGG 42704 |||||| || ||||| |||| ||||| | ||| || ||| || || || || || | Sbjct 403035 GAAGGCTGAGTGGGCCCTCAGGTGGATTG-GAGACCTGCGA-GCCACTTTTGGGGAACGT 403092 Query 42705 CTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTC 42764 |||| || || | || || || || ||||| ||||| || |||| || | || ||| Sbjct 403093 GTGGTTGCTTTCGCAGCTGTGGAAGGGATCTTTTTCTCTGGGTCCTTTGCAGCTATATTC 403152 Query 42765 TGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 ||| | ||| ||| | | |||||| || || || ||||| ||||| || |||||||| Sbjct 403153 TGGTTGAAGAAGAGAGGATTGATGCCAGGGCTGACTTTCTCCAACGAGCTGATCAGCAGA 403212 Query 42825 GACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAG 42884 || |||||| |||| | || |||||||| || |||| |||||||| ||| | Sbjct 403213 GATGAGGGGATGCACACTGAGTTTGCCTGTCTGATGTT---TAGCCACCTGGTTAACAGG 403269 Query 42885 CC-CTCGAAGGAGCGGGTC-CGGGCCATCAT-CACGGAGGCCGTGGAGATCGAGAAGGAG 42941 || ||| | || || | | || || || | ||||| |||| ||| | ||| Sbjct 403270 CCAAGCGAGGCAGATATTCACCAG--ATTATAGACAG-TGCCGTCAAGATTGAGCAAGAG 403326 Query 42942 TTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAG 43001 || | || | | || |||||| ||| | || ||||| || ||||| ||| || Sbjct 403327 TTTTTGACAGACGCCCTTCCCGTGAAGCTGATTGGGATGAATCAAGACCTGATGAAACAG 403386 Query 43002 TACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGA-TGGGTCT-CAGCCGCCTCTACA 43059 || || ||| || || || | | | || ||| | | | | |||| | |||| Sbjct 403387 TATATTGAGTTTGTAGCAGA-TAGATTGT-TGGGAGACTTGATGTGCAGCAAGATTTACA 403444 Query 43060 ACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTT 43119 |||| |||||| ||||| |||||||||||||| |||||||||||| |||||| | Sbjct 403445 ACACTGAAAACCCCTTTGACTTCATGGAGAACATCTCCCTGGAGGGCAAGAGCAACTTCT 403504 Query 43120 TCGAGAAGCGCGTCGCCGACTACCAG 43145 | |||||| || | || |||||| Sbjct 403505 TTGAGAAGAAGGTGGGAGAGTACCAG 403530 >seq1648 Length=77580 Score = 235 bits (260), Expect = 1e-56 Identities = 452/658 (69%), Gaps = 29/658 (4%) Strand=Plus/Minus Query 42501 GAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTAC 42560 ||||| || || ||||| || |||||||| ||||| |||||||| ||||| ||| ||||| Sbjct 8662 GAGGCTCGGTGTTTCTATGGGTTCCAGATCGCCATGGAGAACGTCCACTCGGAGATGTAC 8603 Query 42561 GCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCC 42620 | ||| | |||||||||||| ||| || | ||| | | |||||||| ||| Sbjct 8602 AGCCTGCTGATTGACACGTACATCCGGGACCCGGGGGAGAGACAGCGGCTGTTCCGGGCA 8543 Query 42621 ATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGT 42680 ||||||| | ||||| | | |||||||||||||||||| | ||||||| ||| Sbjct 8542 GTGGAGACCCTCCCCTGTGTGCGCAGGAAGGCGGACTGGGCGCTGCAGTGGATCGCCAGT 8483 Query 42681 CCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTC 42740 ||| | | ||||| ||| ||||||| ||||| | ||||| ||||| |||||||| Sbjct 8482 AAAGACACCAGCTTCGGGGAGCGGCTGGTCGCCTTCGCTGCCGTGGAGGGAGTCTTCTTC 8423 Query 42741 TCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACC 42800 || || | || || |||| |||||||| ||| | | | |||||| || || ||| Sbjct 8422 TCAGGGTCATTTGCTGCCATTTTCTGGCTAAAGAAACGCGGGCTGATGCCAGGCCTGACC 8363 Query 42801 TTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTG 42860 ||||| || ||||| || || | |||||||| |||| | || || |||||||| || Sbjct 8362 TTCTCAAATGAACTAATTAGTCGTGACGAGGGCTTGCACTGTGAGTTCGCCTGCCTGTTG 8303 Query 42861 TT------CTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATC 42914 || || || ||||| || | ||||| || ||| | | | ||| || Sbjct 8302 TTTAAACACTTGATCCACC---CGC-CCAGCCC-GGACAGAGTGACACAG----ATCGTC 8252 Query 42915 ACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTC 42974 || ||||||| |||||| |||||||||| ||| || | || | ||| | || || Sbjct 8251 ACCCAGGCCGTCAGTATCGAGCAGGAGTTCCTTACGGAGGCCATGTCGGTGGACATGATC 8192 Query 42975 GGCATGAAC-CACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTG 43033 || |||||| ||| | || ||| | ||||| ||| || || |||| || | || Sbjct 8191 GGGATGAACTCAC-AGCTGATGAAAACCTACATTGAGTTTGTAGCAGACCGGCTGC--TG 8135 Query 43034 CCAGATGGGTCTCAGCCG-CCTCTACAACACGCCGTG-----CCCCTTCGACTTTATGGA 43087 |||| |||||| | || | ||||| ||| || ||||||||||| Sbjct 8134 GCAGA----GCTCAGCTGTCCGAAGGTTTATTCCGTGGAAAACCCGTTTGACTTTATGGA 8079 Query 43088 GAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 || ||||| | |||| ||| | |||||||| |||||| | || || || |||||| Sbjct 8078 AAATATCTCCCTCCAGGGGAAGGCAAACTTTTTTGAGAAGAGGGTGGCTGAGTACCAG 8021 >seq2197 Length=5472366 Score = 129 bits (142), Expect = 1e-24 Identities = 98/116 (84%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 244706 ACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTG 244765 ||||| || | | | ||||||| || ||||||||||||||||| || |||||||||||| Sbjct 5039043 ACCTCATCTGGGCTTGTGTACTCCACGATCTCGGTGCAGAGGTTGCTACACTTGATGGTG 5038984 Query 244766 CCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGG 244821 || |||| ||| || || |||||| ||||||||||||||||||| |||||| |||| Sbjct 5038983 CCGAGGTTCTGCTGGTTAGACTTGCCGTTGCAGGCGTCCTTGTACAGCATGTAGGG 5038928 Score = 105 bits (116), Expect = 1e-17 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 244369 CTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTT 244428 || ||| || | |||||| | | | ||| ||||||||||||||||||||||| || Sbjct 5041663 CTTGGCGAGTTCACAGCTGGCCTGCATGGCTCCGTAGTAGATGGTCTCGAAGATCTGTTT 5041604 Query 244429 GTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGC 244488 ||||| || |||||| ||| ||||||| | ||||| ||||| ||| || Sbjct 5041603 GTTCAGGTGCTGGGCCTGCTCGCTCTCGAAGGGGTAACGCATCAGGATGAAACAGTCTGC 5041544 Query 244489 CAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAG 244534 ||| |||||||| ||||| |||||||| | ||| | |||||||||| Sbjct 5041543 CAGGCCCTGCACACCGATACCGATGGGCCGGTGCCTCTTGTTGGAG 5041498 >seq1787 Length=2284422 Score = 114 bits (126), Expect = 2e-20 Identities = 140/188 (74%), Gaps = 5/188 (3%) Strand=Plus/Minus Query 42748 CCTTCGCCTCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCG 42806 |||| || | || |||||||| ||| ||| |||| | |||||| || || || ||||| Sbjct 1959525 CCTTTGCTGCTATTTTCTGGCTGAAGAAGAGAGGTCT-GATGCCTGGGCTGACGTTCTCC 1959467 Query 42807 AACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCG 42866 ||||| || |||||||| |||||||| ||||| | |||||||||||||| ||||| Sbjct 1959466 AACGAGCTGATCAGCAGAGACGAGGGTCTGCACTGTGACTTTGCCTGCCTGATGTTC--- 1959410 Query 42867 AGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTG 42926 |||||| | | |||||||| ||||| ||| ||||||||| ||| || || Sbjct 1959409 AGCCACTTGGTGAACAAGCCCAGCGAGGAGGCCATCCACTCCATCATCAGGGACGCTGTC 1959350 Query 42927 GAGATCGA 42934 ||||||| Sbjct 1959349 AAGATCGA 1959342 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 || ||||| ||||| ||||| ||||||| | ||||||||||| |||||||| |||| Sbjct 1959957 CTCTTCAATGCCATAGAGACCCTGCCCTGTGTGAAGAAGAAGGCTGACTGGGCACTCAGG 1959898 Query 42669 TGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAG 42728 ||||||| | || || || ||||| ||| | |||| ||||| | || || ||| Sbjct 1959897 TGGATCGGGGACAAGGAAGCCACTTTCGGGGAGCGTGTGGTTGCCTTCGCTGCTGTAGAG 1959838 Query 42729 GGCATCTTCTTCTCGGG 42745 || ||||||||||| || Sbjct 1959837 GGAATCTTCTTCTCAGG 1959821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944311955814080