Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq1531 194 1e-44 seq1224 95.1 1e-14 >seq1531 Length=8964412 Score = 194 bits (214), Expect = 1e-44 Identities = 421/625 (67%), Gaps = 4/625 (1%) Strand=Plus/Minus Query 20198 TGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCAAGC 20257 || || ||||||| ||||| | ||| ||||| || | || || || | || || | | Sbjct 377441 TGCGCGTCTCCCAGGGTGTGTACAAAGTCCCCAGGCTTTAGTCCTGTGATGTGGGCTATC 377382 Query 20258 ATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCC 20317 ||||| || | ||| |||||||| ||||| || ||||| || | || |||||||| Sbjct 377381 ATATAGGTCAGGAGACTGTAGCTGGCGATGTTGAACGGAACGCCGAGGCCAATGTCTCCG 377322 Query 20318 GACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTG-ACATAACAA 20376 || | ||| ||||||||||| || ||||| |||||| || ||||| || ||| || Sbjct 377321 GAGCGCTGGTACAGCTGACACGAGAGCTCGCCGTCACAAACGTAAAACTGCACA-AAGGT 377263 Query 20377 GTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACATAATGAT 20436 ||| ||||| || |||||||| | || ||| | ||||||||||| | || || || Sbjct 377262 GTGGCAGGGAGGCAGCGCCATATTGGGCACGTCTGGTGGGTTCCACGCGGATATGATTAT 377203 Query 20437 TCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAATTGGTCAAACCC 20496 || || || || || | ||| || || | | | | | | ||||| | || Sbjct 377202 CCTCCTGTCATGAGGGTCATTCTTGATGGTGTGGATGACCTGGGCTAGCTGGTCCACACC 377143 Query 20497 CTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCACTGGAA 20556 || || || ||||||| | ||| || |||| |||||||||||||| ||||| Sbjct 377142 TTGTCCCGTGTAGTCAGTGTTTTTATCCTTATATTCCGCTCCAAAGTGCCTCCATTGGAA 377083 Query 20557 ACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCCAGGCCGCGCCCGGCCAGGAA 20616 || || | || |||| || |||||| || ||| || |||| | ||| ||| Sbjct 377082 GCCATAGATGGGGCCCAGGTCTCCCTCCTCATAATGGTTCAGACCACGCCTGTCCAAGAA 377023 Query 20617 CTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCCTGTTCT-TGAAAGCTCCCTGGAGT 20675 || | || || || |||||||| | || | | || | ||||| ||| ||| || Sbjct 377022 TTCTCGCGAACCGTTCGCATCCCATATATGCAC-CTTTTTGTCAGAAAGTTCCTTGGCGT 376964 Query 20676 CAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCGCCAAAACACCCGCT 20735 ||| ||| | ||||| || ||||||| || || |||| ||| ||||| |||| Sbjct 376963 TCGTAGAGCCCCGAACGAACCAGAGGAGCTCTTCGACAACCCCTCTCCAGAACACACGCT 376904 Query 20736 TTGTGGTTAGTAAGGGAAAGTGGTCCCGCAGACTATACCTGGCCTGCATGCCAAATAGAG 20795 ||||||| || |||||||| || | | |||||||| | ||| ||||| | || Sbjct 376903 TTGTGGTGAGCAAGGGAAACTGCCCTCTGAGACTATAGCGACACTGGGCACCAAAAACAG 376844 Query 20796 AGAGGGTGCCTATGCCGGTGCGGTC 20820 | | ||| ||| | || || ||||| Sbjct 376843 ACAAGGTCCCTGTTCCTGTACGGTC 376819 >seq1224 Length=3633418 Score = 95.1 bits (104), Expect = 1e-14 Identities = 158/228 (69%), Gaps = 8/228 (4%) Strand=Plus/Minus Query 20534 GCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGC 20593 || |||||||||||||||||||| ||||| ||||| || | || |||||| ||| Sbjct 3004518 GCACCAAAGTGCCTCCACTGGAAGCCGTACACAGGGCCGAGGTCTCCCTCCTCATAGTGG 3004459 Query 20594 GCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCCT 20653 ||| || ||| | ||||||| || | |||||||| |||||| || | || Sbjct 3004458 CTCAGTCCACGCTTGTCCAGGAAGTCACGTGAGCCATTGGCGTCCCAGATGTGCAC---- 3004403 Query 20654 GTTCTT----GAAAGCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTG 20709 ||| || ||||| || || | ||| ||| | | |||||| | ||||| | Sbjct 3004402 GTTTTTGTCAGAAAGTTCTGTGCCATTTGTAGAGCCCCTGACAAACCACAAGAGCTCCTC 3004343 Query 20710 CACTACGCCTCGCCAAAACACCCGCTTTGTGGTTAGTAAGGGAAAGTG 20757 |||| || | ||||||||| ||||| ||||| || |||||||| || Sbjct 3004342 AGCTACCCCCCTCCAAAACACACGCTTCGTGGTCAGCAAGGGAAACTG 3004295 Score = 89.7 bits (98), Expect = 5e-13 Identities = 107/143 (75%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 20257 CATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCC 20316 ||| || || | ||| || |||||||| ||||| || || || || | ||| ||||||| Sbjct 3005349 CATGTAGGTGAGGAGAGAGTAGCTGGCGATGTTGAAGGGTACGCCGAGTCCCGTGTCTCC 3005290 Query 20317 CGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATA-AAATTGACATAACA 20375 ||| | ||| ||||||||||| || || || |||| | |||||| || | |||| || Sbjct 3005289 CGAGCGCTGGTACAGCTGACACGACAGTTCTCCGTTACATACATAGAACTGGACA-AAGG 3005231 Query 20376 AGTGACAGGGCGGAAGCGCCATC 20398 ||| ||||| || | ||||||| Sbjct 3005230 CGTGGCAGGGTGGCAACGCCATC 3005208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441360066394720