Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1001 87.8 1e-12 seq317 87.8 1e-12 seq1642 86.0 5e-12 seq1456 86.0 5e-12 >seq1001 Length=3733086 Score = 87.8 bits (96), Expect = 1e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 ||| || || | ||| |||||||||| || || |||||||||||||| |||||||| || Sbjct 1254411 GAATCCACCACGCAGACGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTC 1254352 Query 33957 TGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCAC 34016 | || || | || |||| |||||||||||||| || || |||||||| || Sbjct 1254351 GGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCTGG 1254292 Query 34017 CGGCACGCTCTCTTTGTC 34034 || | || ||| ||||| Sbjct 1254291 GGGGATGCCCTCCTTGTC 1254274 >seq317 Length=4125 Score = 87.8 bits (96), Expect = 1e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 ||| || || | ||| ||||||||||||||||| || ||||||||| |||||||| || Sbjct 1687 GAATCCACCACGCAGACGCAGCACCAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTC 1628 Query 33957 TGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCAC 34016 | || || | || ||||| |||||||||||||| || || ||||| || || Sbjct 1627 GGACAGGGTGCGGCCATCTTCCAACTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCTGG 1568 Query 34017 CGGCACGCTCTCTTTGTC 34034 || | || ||| ||||| Sbjct 1567 TGGGATGCCCTCCTTGTC 1550 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||||||||| || ||| ||||| |||||||| || | | Sbjct 999 CCACCACGCAGACGCAGCACCAGATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCGGAC 940 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || ||||| |||||||| ||||| || || |||||||| || ||| Sbjct 939 AGGGTGCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGCGGG 880 Query 34021 ACGCTCTCTTTGTC 34034 | || ||| ||||| Sbjct 879 ATGCCCTCCTTGTC 866 >seq1642 Length=8617102 Score = 86.0 bits (94), Expect = 5e-12 Identities = 73/85 (86%), Gaps = 4/85 (5%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTA-ACTGAGTAAGATCTAAGGAAC 115587 |||||||| |||||||||||||||| |||||||| ||| | || | | |||| ||||||| Sbjct 5265889 CATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAGAATGTG-ACGATCAAAGGAAC 5265831 Query 115588 CAAAACTGATATATTGAGCCATTCG 115612 || ||||||| || ||||||||||| Sbjct 5265830 CATAACTGATTTAATGAGCCATTCG 5265806 Score = 86.0 bits (94), Expect = 5e-12 Identities = 73/85 (86%), Gaps = 4/85 (5%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTA-ACTGAGTAAGATCTAAGGAAC 114390 |||||||| |||||||||||||||| |||||||| ||| | || | | |||| ||||||| Sbjct 5265889 CATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAGAATGTG-ACGATCAAAGGAAC 5265831 Query 114391 CAAAACTGATATATTGAGCCATTCG 114415 || ||||||| || ||||||||||| Sbjct 5265830 CATAACTGATTTAATGAGCCATTCG 5265806 >seq1456 Length=293654 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/134 (75%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | ||| || ||||| || || || |||||||||||||| |||||||| || | | Sbjct 119418 CCTCCACGCAGACGGAGCACAAG-TGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAC 119360 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || | || |||| |||||||||||||| || || |||||||| || || Sbjct 119359 AAGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGG 119300 Query 34021 ACGCTCTCTTTGTC 34034 | || ||| ||||| Sbjct 119299 ATGCCCTCCTTGTC 119286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397051231131016