Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1648 120 4e-22 seq1531 98.7 1e-15 seq2197 86.0 7e-12 >seq1648 Length=77580 Score = 120 bits (132), Expect = 4e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 ||| ||||| ||| | ||||||||||| || |||||||| |||||| ||| || Sbjct 8312 GGCGAACTCACAGTGCAAGCCCTCGTCACGACTAATTAGTTCATTTGAGAAGGTCAGGCC 8371 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165 |||||| || || || ||||| | ||||||||| ||| |||||| || |||||||||| Sbjct 8372 TGGCATCAGCCCGCGTTTCTTTAGCCAGAAAATGGCAGCAAATGACCCTGAGAAGAAGAC 8431 Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTT-GTGTCAA 126224 ||||||||| ||||| || | || ||||| | ||| | | | |||| || | | Sbjct 8432 TCCCTCCACGGCAGCGAAGGCGACCAGCCGCTCCCCGAAGCTG-GTGTCTTTACTGGCGA 8490 Query 126225 ACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCT 126272 ||||| || |||||| | |||||| | | ||| |||| ||||| Sbjct 8491 TCCACTGCAGCGCCCAGTCCGCCTTCCTGCGCACACAGGGGAGGGTCT 8538 >seq1531 Length=8964412 Score = 98.7 bits (108), Expect = 1e-15 Identities = 190/276 (69%), Gaps = 6/276 (2%) Strand=Plus/Minus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 ||||||||| ||| | ||||| || | | ||| || || || ||||| ||| || Sbjct 403239 GGCAAACTCAGTGTGCATCCCCTCATCTCTGCTGATCAGCTCGTTGGAGAAAGTCAGCCC 403180 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165 |||||| | || | ||||||||||||||| || || ||| || || ||||| ||||| Sbjct 403179 TGGCATCAATCCTCTCTTCTTCAACCAGAATATAGCTGCAAAGGACCCAGAGAAAAAGAT 403120 Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGC-AAAGGAGCGCGACTTTGTGTCAA 126224 || |||||| ||||| |||| | ||| || | |||| || || | | ||| Sbjct 403119 CCCTTCCACAGCTGCGAAAGCAACCACACGTTCCCCAAAAGTGGCTCGCAGGTCT-CCAA 403061 Query 126225 ACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAA 126284 |||| | | ||||||| ||||| |||| | ||| || ||||| ||| || | || Sbjct 403060 TCCACCTGAGGGCCCACTCAGCCTTCTTCTTTACACAAGGTGTGGTCTCGATTGCATTAA 403001 Query 126285 AGAGTTCCTTCTTTTCTGAT--GGATCTTTGATGTA 126318 | || | || |||||| || ||||| | ||||| Sbjct 403000 ACAGATGCT--TTTTCTCATGCGGATCCTCAATGTA 402967 >seq2197 Length=5472366 Score = 86.0 bits (94), Expect = 7e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||| | ||| | | |||| ||||| |||| |||||| || |||||| Sbjct 5042622 TAGATGTTGCTGGTGTAAGCCTCGATGGACTCGTTGTTCCCCAGGATTTGTGCAGTGGAG 5042563 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 114033 |||||||||||||| |||| | |||||||| Sbjct 5042562 GCTGTGGGCATGGGGGCCAACAACAGGCTGTT 5042531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597336366348640