Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq317 100 3e-16 seq1456 98.7 1e-15 seq1001 89.7 5e-13 seq2197 84.2 2e-11 >seq317 Length=4125 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| || | ||| | | |||||||||| || |||||||||||| | Sbjct 1683 CCACCACGCAGACGCAGCACCAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAC 1624 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || | || || |||| | |||| |||||||||||||| || || Sbjct 1623 AGGGTGCGGCCATCTTCCAACTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGTGGG 1564 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | |||||| | | |||||| Sbjct 1563 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCAGATGGCTCCACT 1504 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | || || || ||||| ||||| || || ||||||||| Sbjct 1503 TCCAGGGTGATGGTCTTGCCTGTCAGGGTTTTAACGAAGATCTGCATG 1456 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||| | ||| || || | |||||||||| || |||||||||||| Sbjct 1228 GCCACCACGCAGACGGAGAACCAAGTGGAGTGTTGACTCCTTCTGGATGTTGTAGTCGGA 1169 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || || || || || || |||| | |||| |||||||||||||| || || Sbjct 1168 CAGGGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGGGG 1109 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | || | |||||| | | ||| || Sbjct 1108 GATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCAGATGGCTCAAC 1049 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | || || || ||||| || || || || ||||||||| Sbjct 1048 TTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCATG 1000 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||||| || | ||| | | | ||||| || || ||||||||||| Sbjct 772 GCCACCACGCAGACGCAGGACAAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 713 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || || || || || || || | | |||| |||||||| ||||| || || Sbjct 712 CAGGGTGCGGCCATCTTCCAGCTGCTTCCCAGCAAAGATGAGACGCTGCTGGTCTGGCGG 653 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | || | |||||||| | ||| || Sbjct 652 GATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCGGATGGCTCGAC 593 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || |||||||| || || ||||| |||||||| Sbjct 592 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 545 >seq1456 Length=293654 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||||| || | ||| | | | ||||| || || ||||||||||| Sbjct 120331 GCCACCACGCAGACGCAGGACAAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 120272 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || || || || || || || | | |||| |||||||| ||||| || || Sbjct 120271 CAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGGGG 120212 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | || | |||||| | || |||||| Sbjct 120211 GATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCTGACGGCTCCAC 120152 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 ||||| || | || || || ||||| || || ||||| ||||||||| || Sbjct 120151 CTCGAGGGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCATGCCT 120100 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||||| || | || | | | |||||||| || ||||||||||| Sbjct 119192 GCCACCACGCAGACGCAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 119133 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || || || || || || || | |||| |||||||| ||||| || || Sbjct 119132 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCTGGGGG 119073 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | || | |||||||| | ||| || Sbjct 119072 GATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCGGATGGCTCGAC 119013 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | || | || || |||||||| ||||| ||||| ||||||||| Sbjct 119012 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCATG 118964 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| || || || | | | |||||| || |||||||||||| | Sbjct 120558 CCACCACGCAGACGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAC 120499 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || | ||||| |||| |||| |||||||||||||| || || Sbjct 120498 AGGGTGCGGCCATCTTCCAACTGTTTGCCGGCGAAGATGAGACGCTGTTGGTCTGGTGGG 120439 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | |||||| | | ||| ||| Sbjct 120438 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCTGATGGCTCAACC 120379 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| || | || || || ||||| ||||| || || ||||||||| Sbjct 120378 TCGAGGGTGATGGTCTTGCCTGTCAGGGTTTTGACGAAGATCTGCATG 120331 >seq1001 Length=3733086 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| || || || | | | |||||| || |||||||||||| | Sbjct 1254407 CCACCACGCAGACGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAC 1254348 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || || || |||| | |||| |||||||| ||||| || || Sbjct 1254347 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCTGGGGGG 1254288 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | |||||||| | ||| ||| Sbjct 1254287 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGATGGCTCAACC 1254228 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || |||||||| || || || || |||||||| Sbjct 1254227 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1254181 >seq2197 Length=5472366 Score = 84.2 bits (92), Expect = 2e-11 Identities = 163/235 (69%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 153833 GTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACA 153892 ||||||| ||| ||||| || || ||||||| ||||||||||||||| |||||||| Sbjct 5038394 GTACAGTTTCTCGAACTCCTCCCCCCAGCAGTCCTCGAGGCCGGGACACTCGTGCGGACA 5038335 Query 153893 CATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAG 153952 ||| |||| ||| | | | | | || || ||||||||| ||||| | ||| | Sbjct 5038334 CATGAGCGTCCAGTCACCATTCTCTTCCACACGCTTCATGAACAGGTCCGGGATCCACAT 5038275 Query 153953 CGCGTACATGAGG--TCGCGCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATT- 154009 ||||| | ||| ||| |||| ||| |||||| ||| |||| | || || | Sbjct 5038274 GGCGTAGAACAGGTCTCGTGCGCGCTGC--TCCTCCTTCCCCGTGTT-CTTTCGAGCGTC 5038218 Query 154010 -GAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACC 154063 | || | | ||||||| |||||||| || || | ||| | || | |||||| Sbjct 5038217 CAGGAACTCGA-AGATGTCTGCGTGCCAAGGCTCCAGGTACATAGCGAAGGCACC 5038164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496248082829760