Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1648 105 8e-18 seq1531 104 3e-17 seq2197 89.7 6e-13 >seq1648 Length=77580 Score = 105 bits (116), Expect = 8e-18 Identities = 161/227 (71%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 || ||||| ||| | ||||||||||| || |||||||| |||||| ||| ||| Sbjct 8313 GCGAACTCACAGTGCAAGCCCTCGTCACGACTAATTAGTTCATTTGAGAAGGTCAGGCCT 8372 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| || || || ||||| | ||||||||| ||| |||||| || |||||||||| Sbjct 8373 GGCATCAGCCCGCGTTTCTTTAGCCAGAAAATGGCAGCAAATGACCCTGAGAAGAAGACT 8432 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTT-GTATCAAA 127698 |||||||| ||||| || | || ||||| | ||| | | | |||| | | | Sbjct 8433 CCCTCCACGGCAGCGAAGGCGACCAGCCGCTCCCCGAAGCTG-GTGTCTTTACTGGCGAT 8491 Query 127699 CCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCT 127745 ||||| || |||||| | ||||| | | ||| |||| ||||| Sbjct 8492 CCACTGCAGCGCCCAGTCCGCCTTCCTGCGCACACAGGGGAGGGTCT 8538 >seq1531 Length=8964412 Score = 104 bits (114), Expect = 3e-17 Identities = 192/276 (70%), Gaps = 8/276 (3%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 |||||||| ||| | ||||| || | | ||| || || || ||||| ||| ||| Sbjct 403238 GCAAACTCAGTGTGCATCCCCTCATCTCTGCTGATCAGCTCGTTGGAGAAAGTCAGCCCT 403179 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| | || | ||||||||||||||| || || ||| || |||||||| |||||| Sbjct 403178 GGCATCAATCCTCTCTTCTTCAACCAGAATATAGCTGCAAAGGACCCAGAGAAAAAGATC 403119 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGAC-TTTGTAT-CAA 127697 || |||||| ||||| |||| | ||| || |||| || || | || | ||| Sbjct 403118 CCTTCCACAGCTGCGAAAGCAACCACACGTTCCCCAAA--AGTGGCTCGCAGGTCTCCAA 403061 Query 127698 ACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAA 127757 |||| | | ||||||| ||||| |||| | ||| || ||||| ||| || | || Sbjct 403060 TCCACCTGAGGGCCCACTCAGCCTTCTTCTTTACACAAGGTGTGGTCTCGATTGCATTAA 403001 Query 127758 AGAGTTCCTTCTTTTCTGAT--GGATCTTTGATGTA 127791 | || | || |||||| || ||||| | ||||| Sbjct 403000 ACAGATGCT--TTTTCTCATGCGGATCCTCAATGTA 402967 >seq2197 Length=5472366 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | ||| | | |||| ||||| |||| |||||| || |||||| Sbjct 5042622 TAGATGTTGCTGGTGTAAGCCTCGATGGACTCGTTGTTCCCCAGGATTTGTGCAGTGGAG 5042563 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 |||||||||||||| |||| | |||||||| Sbjct 5042562 GCTGTGGGCATGGGGGCCAACAACAGGCTGTT 5042531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613489500317280