Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1648 145 1e-29 seq2197 109 9e-19 >seq1648 Length=77580 Score = 145 bits (160), Expect = 1e-29 Identities = 309/458 (67%), Gaps = 9/458 (2%) Strand=Plus/Plus Query 159629 TTCTTGTATTGCGACACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGAT 159688 |||| ||| | | ||| ||||||| |||||||| | ||| |||| | ||| || | Sbjct 8019 TTCTGGTACTCAGCCACCCTCTTCTCAAAAAAGTTTGCCTTCCCCTGGAGGGAGATATTT 8078 Query 159689 TCCATGAACCCGAATGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGC 159748 ||||| || | || ||||| | |||| ||| ||||||| | | ||| | |||||| Sbjct 8079 TCCATAAAGTCAAACGGGTTTTCCACGGAATAAACCTTCGGACAGCTGAGCTCTGCCAGC 8138 Query 159749 AACCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGC 159808 | || |||||| ||||| || |||||| | |||| ||| |||| ||||| | || Sbjct 8139 AGCCGGTCTGCTACAAACTCAATGTAGGTTTTCATCAGCTGTGAGTTCATCCCGATCATG 8198 Query 159809 CTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATC 159868 || | | || |||| || ||||||| ||| || ||| || | ||| || ||| Sbjct 8199 TCCACCGACATGGCCTCCGTAAGGAACTCCTGCTCGATACTGACGGCCTGGGTGACGATC 8258 Query 159869 TGCGAGACAC-GTTCGTACCC--CGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCAC 159925 || | || | || || | ||| | | ||| ||| ||||||| ||||| Sbjct 8259 TGTGTCACTCTGTCCGGGCTGGGCGGGTGGATCAAG-TGT-----TTAAACAACAGGCAG 8312 Query 159926 GCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCC 159985 || || || ||||||| |||||||| ||| || | || || || | | | ||||| Sbjct 8313 GCGAACTCACAGTGCAAGCCCTCGTCACGACTAATTAGTTCATTTGAGAAGGTCAGGCCT 8372 Query 159986 GGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATC 160045 ||||| | ||| || || ||||| |||||||| ||||| | || || |||| Sbjct 8373 GGCATCAGCCCGCGTTTCTTTAGCCAGAAAATGGCAGCAAATGACCCTGAGAAGAAGACT 8432 Query 160046 CCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAA 160083 ||||||||||| || || || || |||| ||| || || Sbjct 8433 CCCTCCACGGCAGCGAAGGCGACCAGCCGCTCCCCGAA 8470 >seq2197 Length=5472366 Score = 109 bits (120), Expect = 9e-19 Identities = 94/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 203953 GTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGAT 204011 |||||| || || ||||| ||||| || |||||||| ||||||||||| | |||| |||| Sbjct 5044097 GTTGGGCTCAGCGATGTGGATGTTGAGGGACTGGCTCTGGTCGATGAATG-CGCCGCGAT 5044039 Query 204012 CTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA 204065 | || ||||| ||||| | | |||||||||||||||||||| |||||| ||| Sbjct 5044038 CAGCCGCCATCTTGATCACGATCTTCTGCGAAATCTCCCACGTGGTCTTGTACA 5043985 Score = 84.2 bits (92), Expect = 3e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942 |||||||||||||||||| | ||| | ||||| | || | | |||||||||||| Sbjct 5039023 CTCCACGATCTCGGTGCAGAGGTTGCTACACTTGATGGTGCCGAGGTTCTGCTGGTTAGA 5038964 Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTG 204996 ||||| ||| |||| ||||||||||| |||| | || |||| |||| |||| Sbjct 5038963 CTTGCCGTTGCAGGCGTCCTTGTACAGCATGTAGGGGTTTCCTGTCTCTGTCTG 5038910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795132259772480