Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq317 138 1e-27 seq1001 134 2e-26 seq1446 132 5e-26 seq1456 129 7e-25 >seq317 Length=4125 Score = 138 bits (152), Expect = 1e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| ||||||||| | || |||||| ||||| ||||||||||| || ||||| | Sbjct 1672 ACGCAGCACCAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCC 1613 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || | |||||||||||| || || | ||||| ||||| | || | || |||||| Sbjct 1612 ATCTTCCAACTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGTGGGATGCCCTCCTT 1553 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| |||||| ||||| || | | ||||| | ||||| |||| ||||| Sbjct 1552 GTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCAGATGGCTCCACTTCCAGGGTGAT 1493 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| ||||| |||||||| ||||| ||||| Sbjct 1492 GGTCTTGCCTGTCAGGGTTTTAACGAAGATCTGCAT 1457 Score = 125 bits (138), Expect = 8e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||| |||| || | || |||||||| ||||| |||||||||| Sbjct 1457 TGCCACCACGCAGACGCAGGACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGG 1398 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || |||||||||||||| || || | ||||| ||||| | || Sbjct 1397 ACAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGCG 1338 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| |||||| ||||| || | | ||||| | || | Sbjct 1337 GGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCTGATGGCTCGA 1278 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| ||||| || || || || || ||||| ||||| Sbjct 1277 CTTCCAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACGAAGATCTGCAT 1229 Score = 116 bits (128), Expect = 4e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||| || ||||| | || ||| || ||||| |||||||| | Sbjct 773 TGCCACCACGCAGACGCAGGACAAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAG 714 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || |||||||| || || || || | ||||||||||| | || Sbjct 713 ACAGGGTGCGGCCATCTTCCAGCTGCTTCCCAGCAAAGATGAGACGCTGCTGGTCTGGCG 654 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| |||||| ||||| || | | |||||| | || | Sbjct 653 GGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCGGATGGCTCGA 594 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 | || | |||||||| ||||| ||||| || || |||||||| ||||| || Sbjct 593 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATATT 542 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||| ||||||||| | || ||| || ||||| |||||||||| Sbjct 1001 TGCCACCACGCAGACGCAGCACCAGATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCGG 942 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || | ||||||||| || || || | ||||||||||| | || Sbjct 941 ACAGGGTGCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGCG 882 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| |||||| ||||| | | | ||||| | || | Sbjct 881 GGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCAGATGGCTCAA 822 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| ||||| || || || || || ||||| ||||| Sbjct 821 CTTCCAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACGAAGATCTGCAT 773 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| | || || |||||||||||||| || Sbjct 1192 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAA 1133 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||| ||||| | || | || ||||||||| |||||| ||||| | Sbjct 1132 GATGAGACGCTGTTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTT 1073 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| | || || |||| |||||||| ||||| ||||| || || || Sbjct 1072 CTCGATGGTGTCAGATGGCTCAACTTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCAC 1013 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 1012 GAAGATCTGCAT 1001 >seq1001 Length=3733086 Score = 134 bits (148), Expect = 2e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| ||||| || | || |||||||| ||||| ||||||||||| || ||||| | Sbjct 1254396 ACGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCC 1254337 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || |||||||||||||| || || | ||||||||||| | || | || |||||| Sbjct 1254336 ATCTTCCAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCTGGGGGGATGCCCTCCTT 1254277 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| |||||| ||||| || | | |||||| | || || || | ||||| Sbjct 1254276 GTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGATGGCTCAACCTCAAGGGTGAT 1254217 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 ||| ||||| ||||| || || || ||||| ||||| || Sbjct 1254216 GGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATATT 1254178 >seq1446 Length=3482675 Score = 132 bits (146), Expect = 5e-26 Identities = 145/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||||| || ||||| | || || ||||||||||||||||| | Sbjct 1542312 CCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGA 1542253 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| |||||||||||| | || | || ||||||||| |||||| ||| | || Sbjct 1542252 TCAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCT 1542193 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | ||||| | ||||| || | |||||||| ||||||||||| || || || | Sbjct 1542192 CGATGGTGTCTGAAGGCTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 1542133 Query 46584 AGATTTGCATTTT 46596 |||| ||||| || Sbjct 1542132 AGATCTGCATATT 1542120 >seq1456 Length=293654 Score = 129 bits (142), Expect = 7e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||| ||| || || | || |||||| ||||| |||||||| | Sbjct 119193 TGCCACCACGCAGACGCAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 119134 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||||||||| ||||| || | ||||||||||| | | Sbjct 119133 ACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCTGGGG 119074 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| |||||| ||||| || | | |||||| | || | Sbjct 119073 GGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCGGATGGCTCGA 119014 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||||| ||||| ||||| ||||| |||||||| ||||| Sbjct 119013 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 118965 Score = 125 bits (138), Expect = 8e-24 Identities = 166/229 (72%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||| | ||| || || | || |||||||| ||||| |||||||||| Sbjct 119420 TGCCTCCACGCAGACGGAGCACAAG-TGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGG 119362 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | | ||||| | || || |||||||||||||| || || | ||||||||||| | | Sbjct 119361 ACAAGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGG 119302 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| |||||| ||||| || | | |||||| | || | Sbjct 119301 GGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATAGTGTCGGATGGCTCGA 119242 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||||| ||||| || || ||||| || ||||| ||||| Sbjct 119241 CTTCAAGGGTGATGGTCTTGCCTGTGAGGGTTTTGACGAAGATCTGCAT 119193 Score = 125 bits (138), Expect = 8e-24 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||| || || || | | ||||| ||||| || | || |||||||| ||||| ||||| Sbjct 120565 TTAGTTTCCACCACGCAGACGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTA 120506 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 |||||| || ||||| | || || | ||| ||||||||||| || | ||||| ||||| Sbjct 120505 GTCGGACAGGGTGCGGCCATCTTCCAACTGTTTGCCGGCGAAGATGAGACGCTGTTGGTC 120446 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA 46539 | || | || ||||||||| |||||| ||||| || | | ||||| | Sbjct 120445 TGGTGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCTGATGG 120386 Query 46540 TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || | |||||||| ||||| ||||| ||||| || ||||| ||||| Sbjct 120385 CTCAACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTTTTGACGAAGATCTGCAT 120332 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||| ||| || || | || |||||| ||||| |||||||| | Sbjct 119876 TGCCACCACGCAGACGCAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 119817 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||||||||| ||||| || | ||||||||||| | | Sbjct 119816 ACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCTGGGG 119757 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| |||||| ||||| || | | |||||| | || | Sbjct 119756 GGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCGGATGGCTCGA 119697 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||||| ||||| || || || || |||||||| ||||| Sbjct 119696 CTTCAAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 119648 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||| || ||||| | || ||| || ||||| |||||||| | Sbjct 120332 TGCCACCACGCAGACGCAGGACAAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAG 120273 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||||||||| || || || | ||||||||||| | | Sbjct 120272 ACAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGGG 120213 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| |||||| ||||| || | | ||||| || |||| Sbjct 120212 GGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCTGACGGCTCCA 120153 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||||| || || ||||| || || |||||||| ||||| Sbjct 120152 CCTCGAGGGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCAT 120104 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||||| ||| || || | || ||| || ||||| |||||||| | Sbjct 120104 TGCCTCCACGCAGACGCAGCACAAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAG 120045 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||||||||| ||||| || | ||||||||||| | | Sbjct 120044 ACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCTGGGG 119985 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| |||||| ||| | || | | ||||| || || | Sbjct 119984 GGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATGGTGTCTGACGGCTCAA 119925 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||||| ||||| || || ||||| || || || ||||| Sbjct 119924 CTTCAAGAGTGATGGTCTTGCCTGTGAGGGTTTTGACGAAAATCTGCAT 119876 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||| | |||| || | || |||||||| ||||| |||||||| | Sbjct 119648 TGCCTCCACGCAGACGGAGAACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAG 119589 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||||||||| || || || | ||||||||||| | | Sbjct 119588 ACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGTG 119529 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| |||||| ||| | | | | || || || |||| Sbjct 119528 GGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTTTCAATGGTATCTGACGGCTCCA 119469 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||||| ||||| || || || || ||||| || ||||| Sbjct 119468 CTTCTAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACAAATATCTGCAT 119420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565222092872160